View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4345-Insertion-2 (Length: 679)
Name: NF4345-Insertion-2
Description: NF4345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4345-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 613; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 9 - 652
Target Start/End: Original strand, 2151480 - 2152121
Alignment:
| Q |
9 |
gtacatattctcttggtccttgatacacaatttgtccatcagtgagaagtattatatcatcaaatagttcataagtttctggtgctggttgtagaagaga |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151480 |
gtacatattctcttggtccttgatacacaatttgtccatcagtgagaagtattatatcatcaaatagttcataagtttctggtgctggttgtagaagaga |
2151579 |
T |
|
| Q |
109 |
aacaagtgcagttccatttagaatatgaatagattgcttgattgagttgattatctgaaaagttgttgaactgtccaaaccatttgatatctcatccatg |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151580 |
aacaagtgcagttccatttagaatatgaatagattgcttgattgagttgattatctgaaaagttgttgaactgtccaaaccatttgatatctcatccatg |
2151679 |
T |
|
| Q |
209 |
aacaacacctttatgggtccaaccagcatctcaccttcacaaaatattattaatcataaacctcattatttaagtttcagataaaggttttcagtttctt |
308 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2151680 |
aacaacacctttataggtccaaccagcatctcaccttcacaaaatattattaatcataaacctcattatttaagtttcagataaaggttttcagtttctt |
2151779 |
T |
|
| Q |
309 |
tgtcatgtttttccttgtcaaatatattttacctgtagtgagtcgctttttctcgcctcctgagatacctcttatcatttggtctcctaccattgtgtcg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2151780 |
tgtcatgtttttccttgtcaaatatattttacctgtagtgagtcgctttttctcgcctcctgagatacctcttatcatttggtctcctaccattgtgtcg |
2151879 |
T |
|
| Q |
409 |
gcacaaacatcaagtcccaaaatctgcaacatatcacaaaggagtaattaaaaccttttcttgtttcacaagttaactatatttggtgaatctggactat |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2151880 |
gcacaaacatcaagtcccaaaatctgcaacatatcacaaaggagtaattaaaaccttttcttgtttcacaagttaactatatttggtgaatctggacta- |
2151978 |
T |
|
| Q |
509 |
taccttaagaatgtagtcaatgaccacactgttctggtggccttctattgctgcttcctgcatattttgagtgaattactagctcataaattaagaagct |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
2151979 |
-accttaagaatgtagtcaatgaccacactgttctggtggccttctattgctgcttcctgcatattttgagtgaattactagctcataaatcaagaagct |
2152077 |
T |
|
| Q |
609 |
ttatcgcagttcaacatgttcaccatttcagacattaggattca |
652 |
Q |
| |
|
|||| |||||| |||||||||||||||||| ||||||||||||| |
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|
| T |
2152078 |
ttattgcagtttaacatgttcaccatttcaaacattaggattca |
2152121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 9 - 245
Target Start/End: Original strand, 2163754 - 2163990
Alignment:
| Q |
9 |
gtacatattctcttggtccttgatacacaatttgtccatcagtgagaagtattatatcatcaaatagttcataagtttctggtgctggttgtagaagaga |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
2163754 |
gtacattttctcttggtccttgatacacaatttgtccatctgtgagcagtattatatcatcaaataattcataagtttctggtgctggttgtagcagaga |
2163853 |
T |
|
| Q |
109 |
aacaagtgcagttccatttagaatatgaatagattgcttgattgagttgattatctgaaaagttgttgaactgtccaaaccatttgatatctcatccatg |
208 |
Q |
| |
|
|||||||| ||||||||||||||||| || ||||| |||||||| ||||||| ||||||||||||||||||||||||||| ||||||| || |||||| |
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| T |
2163854 |
cacaagtgcggttccatttagaatatggattgattgtctgattgagctgattatttgaaaagttgttgaactgtccaaaccagttgatatttcgtccatg |
2163953 |
T |
|
| Q |
209 |
aacaacacctttatgggtccaaccagcatctcacctt |
245 |
Q |
| |
|
||||| ||| |||| ||||||||||||||||| |||| |
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|
| T |
2163954 |
aacaatacccttattggtccaaccagcatctcccctt |
2163990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 338 - 440
Target Start/End: Original strand, 2164250 - 2164352
Alignment:
| Q |
338 |
tacctgtagtgagtcgctttttctcgcctcctgagatacctcttatcatttggtctcctaccattgtgtcggcacaaacatcaagtcccaaaatctgcaa |
437 |
Q |
| |
|
||||||| |||| || |||||||| |||||||| ||||||||||||||| ||||||||||| |||||||||| | || | |||||||||||| || |
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|
| T |
2164250 |
tacctgttgtgactctctttttctgccctcctgaaatacctcttatcattccatctcctaccataatgtcggcacatatttccaatcccaaaatctgtaa |
2164349 |
T |
|
| Q |
438 |
cat |
440 |
Q |
| |
|
||| |
|
|
| T |
2164350 |
cat |
2164352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 1e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 33 - 240
Target Start/End: Original strand, 8537245 - 8537451
Alignment:
| Q |
33 |
acacaatttgtccatcagtgagaagtattatatcatcaaatagttcataagtttctggtgctggttgtagaagagaaacaagtgcagttccatttagaat |
132 |
Q |
| |
|
|||||||||||||||| ||||| | ||| ||||||| ||||| ||||||||||||||||||||||||| | ||||| | | ||||| ||||||||||||| |
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|
| T |
8537245 |
acacaatttgtccatctgtgagcaatatgatatcattaaataattcataagtttctggtgctggttgtcgcagagaca-atgtgcaattccatttagaat |
8537343 |
T |
|
| Q |
133 |
atgaatagattgcttgattgagttgattatctgaaaagttgttgaactgtccaaaccatttgatatctcatccatgaacaacacctttatgggtccaacc |
232 |
Q |
| |
|
||| || |||| | |||||||| | ||||| ||||||||| || |||||||||| ||| ||||||| |||||||||||||| ||| |||| ||||||||| |
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|
| T |
8537344 |
atggattgatttcctgattgagcttattatttgaaaagtttttaaactgtccaagccagttgatatttcatccatgaacaagacccttataggtccaacc |
8537443 |
T |
|
| Q |
233 |
agcatctc |
240 |
Q |
| |
|
|||||||| |
|
|
| T |
8537444 |
agcatctc |
8537451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 20 - 210
Target Start/End: Complemental strand, 49770426 - 49770236
Alignment:
| Q |
20 |
cttggtccttgatacacaatttgtccatcagtgagaagtattatatcatcaaatagttcataagtttctggtgctggttgtagaagagaaacaagtgcag |
119 |
Q |
| |
|
||||| |||||||||||||||||||| || | ||| || ||||| || || |||| || |||||||| |||| ||| ||||||||||| | ||| || | |
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|
| T |
49770426 |
cttggaccttgatacacaatttgtccgtctgagaggagaattatgtcgtcgaataaatcgtaagtttcaggtgttggctgtagaagagagataagagctg |
49770327 |
T |
|
| Q |
120 |
ttccatttagaatatgaatagattgcttgattgagttgattatctgaaaagttgttgaactgtccaaaccatttgatatctcatccatgaa |
210 |
Q |
| |
|
||||||| ||||| || || |||||| | | ||| || || || ||||| ||||||||||||||||||||| | ||||| || |||||||| |
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|
| T |
49770326 |
ttccattcagaatgtggatggattgccttagtgaattaatcatttgaaatgttgttgaactgtccaaaccagtcgatatttcgtccatgaa |
49770236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 4302384 - 4302256
Alignment:
| Q |
10 |
tacatattctcttggtccttgatacacaatttgtccatcagtgagaagtattatatcatcaaatagttcataagtttctggtgctggttgtagaagagaa |
109 |
Q |
| |
|
||||| || |||||| ||||||||||||||||||||||| || || | ||| |||||||| |||| ||||||||||||| ||||||| ||||| |||| |
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|
| T |
4302384 |
tacattttttcttgggccttgatacacaatttgtccatctgtaagcaatatgatatcatcgaataattcataagtttctagtgctggctgtagcagagtt |
4302285 |
T |
|
| Q |
110 |
acaagtgcagttccatttagaatatgaat |
138 |
Q |
| |
|
|||||||||||||||||||| |||||||| |
|
|
| T |
4302284 |
acaagtgcagttccatttaggatatgaat |
4302256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 42135652 - 42135697
Alignment:
| Q |
65 |
tcatcaaatagttcataagtttctggtgctggttgtagaagagaaa |
110 |
Q |
| |
|
|||||||| |||||| | || ||||||||||||||||||||||||| |
|
|
| T |
42135652 |
tcatcaaagagttcaaatgtctctggtgctggttgtagaagagaaa |
42135697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 4e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 2900569 - 2900756
Alignment:
| Q |
23 |
ggtccttgatacacaatttgtccatcagtgagaagtattatatcatcaaatagttcataagtttctggtgctggttgtagaagagaaacaagtgcagttc |
122 |
Q |
| |
|
||||||||||| |||||||| ||||| | | ||| || || |||||||| ||||||||||| |||||||||||||| || | ||| | || |||||||| |
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|
| T |
2900569 |
ggtccttgatagacaatttgaccatcggatataagaataatgtcatcaaaaagttcataagtctctggtgctggttgaagcaaagagataactgcagttc |
2900668 |
T |
|
| Q |
123 |
catttagaatatgaatagattgcttgattgagttgattatctgaaaagttgttgaactgtccaaaccatttgatatctcatccatgaa |
210 |
Q |
| |
|
|||| |||||||||| | ||||| | | || || | || || |||||||| ||||||||||| ||| | ||||| ||||||||||| |
|
|
| T |
2900669 |
cattaagaatatgaacatattgcctaagagatttcacaatttggaaagttgtggaactgtccaagccagtagatatttcatccatgaa |
2900756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 2884395 - 2884208
Alignment:
| Q |
23 |
ggtccttgatacacaatttgtccatcagtgagaagtattatatcatcaaatagttcataagtttctggtgctggttgtagaagagaaacaagtgcagttc |
122 |
Q |
| |
|
|||||||| || |||||||| ||||||| | ||| || || |||||||| ||||||||||| || ||||||||||| || | ||| | || || |||| |
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|
| T |
2884395 |
ggtccttggtagacaatttgaccatcagatataagaataatgtcatcaaaaagttcataagtctcaggtgctggttggagtaaagagataactgtggttc |
2884296 |
T |
|
| Q |
123 |
catttagaatatgaatagattgcttgattgagttgattatctgaaaagttgttgaactgtccaaaccatttgatatctcatccatgaa |
210 |
Q |
| |
|
|||| ||||| |||| | |||||| | || | | || || |||||||| ||||||||||||||| | ||||| ||||||||||| |
|
|
| T |
2884295 |
cattaagaatgtgaacatattgctgaagagatctcacaatttggaaagttgtggaactgtccaaaccagtagatatttcatccatgaa |
2884208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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