View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4345_low_1 (Length: 443)
Name: NF4345_low_1
Description: NF4345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4345_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 11 - 428
Target Start/End: Complemental strand, 7917340 - 7916923
Alignment:
| Q |
11 |
taatacttaccttagaaattaatttttgagtgaaattctataatgagatgatagttcattttaagattaattgtgttgtgtgctattcagtcaccactat |
110 |
Q |
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| T |
7917340 |
taatacttaccttagaaattaatttttgagtgaaattctataatgagatcatagttcattttaagattaattgtgttgtgtgctattcagtcaccactat |
7917241 |
T |
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| Q |
111 |
tggactacggagattacgtttcagatgtctaataattagcgtaatggttaatgctaagagttagacattgaataaaacatgcatgacaattaatttataa |
210 |
Q |
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| T |
7917240 |
tggactacggagattacgtttcagatgtctaataattagcgtaatggttaatgctaagagttagacattgaataaaatatgcatgacaattaatttataa |
7917141 |
T |
|
| Q |
211 |
gtaatagatattgtattatgtccaactcaaattttaagattagttatttaggttatagattggatatactttgtagtgatctagcgttactatattgtaa |
310 |
Q |
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| T |
7917140 |
gtaatagatattgaattatgtccaactcaaattttaagattagttatttaggttatagattggatatactttgtagtgatctagagttactatattgtaa |
7917041 |
T |
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| Q |
311 |
gaatgtggaaatgtaatactacaatgaattggaaatgatgaaaagtgtgtgttaggagtattcatatagttaagttgttagaaatctatcctacaaatct |
410 |
Q |
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| T |
7917040 |
gaatgtggaaatgtaatactacaatgaattggaaatgatgaaaagtgtgtgttaggagtattcatatagttaagttgttagaaatctatcctaaaaatct |
7916941 |
T |
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| Q |
411 |
atatatcttaattgattt |
428 |
Q |
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| T |
7916940 |
atatatcttaattgattt |
7916923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 6152479 - 6152523
Alignment:
| Q |
313 |
atgtggaaatgtaatactacaatgaattggaaatgatgaaaagtg |
357 |
Q |
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| T |
6152479 |
atgtggaaatttaatattacaatgaattggaaatgatgataagtg |
6152523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 360
Target Start/End: Complemental strand, 33730877 - 33730830
Alignment:
| Q |
313 |
atgtggaaatgtaatactacaatgaattggaaatgatgaaaagtgtgt |
360 |
Q |
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| T |
33730877 |
atgtggaaatttaatattgcaatgaattggaaatgatgataagtgtgt |
33730830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 6127438 - 6127488
Alignment:
| Q |
226 |
ttatgtccaactcaaattttaagattagttatttaggttatagattggata |
276 |
Q |
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|||||| |||| ||||| | |||||||||||||||||||||||||||||| |
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| T |
6127438 |
ttatgttcaacctaaattctgagattagttatttaggttatagattggata |
6127488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 6152920 - 6152970
Alignment:
| Q |
226 |
ttatgtccaactcaaattttaagattagttatttaggttatagattggata |
276 |
Q |
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|||||| |||| |||||| | ||||||||| |||||||||||||||||||| |
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| T |
6152920 |
ttatgttcaacccaaattctgagattagttgtttaggttatagattggata |
6152970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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