View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4345_low_2 (Length: 437)
Name: NF4345_low_2
Description: NF4345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4345_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 368
Target Start/End: Complemental strand, 14916490 - 14916127
Alignment:
| Q |
10 |
attattcttggcactagtctcattctttctgaggttttcaaagccctctctgattaatcatttcgtcaaatgattagttaatctctctctct----tact |
105 |
Q |
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| T |
14916490 |
attattcttggcactagtctcattctttctgaggttttcaaagccctctctgactaatcatttcgtcaaatgattagttaatctctctctctctcttact |
14916391 |
T |
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| Q |
106 |
aattcttttgtcaatggaccagtcaaatttcttcatatctcatatgatcatc---ttatttactttgtaatagctatgactctatctcaatcgatcaata |
202 |
Q |
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| T |
14916390 |
aattctttcgtcaatggaccagtcaaatttcttcatatctcatatgatcatcatcttatttactttgtaatagttatgact--atcacaatcgatcaata |
14916293 |
T |
|
| Q |
203 |
tggttgaaaatcacatgtattatttaggaaaatttaatagattattccatgcatcattgtaattttcaagtacaacggtaagctaatcaacatcattgta |
302 |
Q |
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| T |
14916292 |
tggttgaaaatcacatgtattatttaggaaaatttaatagattattccatgcatcattgtaattttcaagtacaatggtaagctaatcaacatcattgta |
14916193 |
T |
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| Q |
303 |
gctttcttgtatcatggtaaacttttttataataattaacatcattgcaactttttagtacaatga |
368 |
Q |
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| T |
14916192 |
gctttcttgtatcatggtaaacttttttataataattaacatcattgcaactttttagtacaatga |
14916127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 420
Target Start/End: Complemental strand, 14916111 - 14916069
Alignment:
| Q |
379 |
gtaatgatcttgaattcatggcc-ttttaaagtaccacatgat |
420 |
Q |
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| T |
14916111 |
gtaatgatcttgaattcatggcctttttaaagtaccacatgat |
14916069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 21 - 355
Target Start/End: Original strand, 48515852 - 48516190
Alignment:
| Q |
21 |
cactagtctcattctttctgaggtttt-caaagccctctctgattaatcatttcgtcaaatgattagttaatctctctctcttactaattcttttgtcaa |
119 |
Q |
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||||||||||||||||||| ||||||| |||| |||||||||| ||||||||||||||||| |||||| ||||| |||||||||||||| |||| || || |
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| T |
48515852 |
cactagtctcattctttctaaggtttttcaaaaccctctctgactaatcatttcgtcaaataattagtcaatctatctctcttactaatcctttggttaa |
48515951 |
T |
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| Q |
120 |
tggaccagtcaaatttcttcatatctcatatgatcatcttatttactttgtaatagctatgactctatctcaatcgatcaatatggttgaaaatcacatg |
219 |
Q |
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| T |
48515952 |
aggattagtcaagtttctttagacctcatatgatcatcttatttaatttgtaattgccatggctctatcacaatcgatcgatatggctggaaatcatatt |
48516051 |
T |
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| Q |
220 |
tattatttaggaaaatttaatagattattccatg---catcattgtaattttcaagtacaacggtaagctaatcaacatcattgtagctttcttgtatca |
316 |
Q |
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| T |
48516052 |
tattatttaggaaaatctagcagattattccatgcatcatcattgtaattttcaaatacattggtaaactaatcaacatcattgtaacttcttaatacaa |
48516151 |
T |
|
| Q |
317 |
tggtaaacttttttataataattaacatcattgcaactt |
355 |
Q |
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||||||||| ||| |||||| | |||||||||| ||||| |
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| T |
48516152 |
tggtaaactctttgataatagtcaacatcattgtaactt |
48516190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 173
Target Start/End: Complemental strand, 6788761 - 6788609
Alignment:
| Q |
21 |
cactagtctcattctttctgaggttttcaaagccctctctgattaatcatttcgtcaaatgattagttaatctctctctcttactaattcttttgtcaat |
120 |
Q |
| |
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||||||| ||||||||| |||||||| ||||||||||||| || |||||||||||||| || | ||||| |||||||||||||| ||| ||||| |
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| T |
6788761 |
cactagtttcattctttttgaggtttacaaagccctctctatctattcatttcgtcaaataatcaaccaatctttctctcttactaatcttttcgtcaaa |
6788662 |
T |
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| Q |
121 |
ggaccagtcaaatttcttcatatctcatatgatcatcttatttactttgtaat |
173 |
Q |
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| |||| ||||||||||| | | ||||||| |||||||||||||||| |||| |
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| T |
6788661 |
gtaccaatcaaatttctttaaacatcatatgttcatcttatttactttataat |
6788609 |
T |
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