View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4345_low_3 (Length: 331)
Name: NF4345_low_3
Description: NF4345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4345_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 2430414 - 2430730
Alignment:
| Q |
1 |
tctttaacttaacttcatataagtatttggtcttctatattttgttcacgtgattttggtccattgacaattgacatatgaattatcaagctccaaatct |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2430414 |
tctttaacttaacttcatataagtatttggtcttttatattttgttcacgtgattttggtccattgacaattgacatatgaattatcaagctccaaatct |
2430513 |
T |
|
| Q |
101 |
agattcatatgcaaacttggatgaaagaccataaatctaaagactgagaggtcacaaggaaataaatcatacatttaaaacttgaatattcatatcaaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
2430514 |
agattcatatgcaaacttggatgaaagaccataaatctaaagactgagaggtcacaaggaaataaatcatagatttaaaagttgaatattcatatcaaat |
2430613 |
T |
|
| Q |
201 |
ggatcaaaagggcaaaaataatgtg------nnnnnnnnngaagataaaagactaaatcgttccttgaaattaaattaaggtacatatttggcaatttgt |
294 |
Q |
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| T |
2430614 |
ggatcaaaagggcaaaaataatgtgaaaaaaaagaagataaaagataaaagactaaatcgttccttgaaattaaattaaggtacatatttggcaatttgt |
2430713 |
T |
|
| Q |
295 |
tagatgaatgtacagac |
311 |
Q |
| |
|
||||||||||||||||| |
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| T |
2430714 |
tagatgaatgtacagac |
2430730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 2434054 - 2434104
Alignment:
| Q |
1 |
tctttaacttaacttcatataagtatttggtcttctatattttgttcacgt |
51 |
Q |
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| T |
2434054 |
tctttaacttaacttcagataagtatttggtcttttatatgtttttcacgt |
2434104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 273
Target Start/End: Original strand, 2434227 - 2434264
Alignment:
| Q |
236 |
aagataaaagactaaatcgttccttgaaattaaattaa |
273 |
Q |
| |
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||||||||| ||||||||||| |||||||||||||||| |
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| T |
2434227 |
aagataaaaaactaaatcgttacttgaaattaaattaa |
2434264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 195
Target Start/End: Complemental strand, 8358591 - 8358469
Alignment:
| Q |
74 |
acatatgaattatcaagctccaaatcta-gattcatatgcaaacttggatgaaagaccataaatctaaagactgagaggtcacaaggaaataaatcatac |
172 |
Q |
| |
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||||||||||| ||||||| |||||||| ||||||||||||||| | |||||||||| ||| | |||||| | |||||||| ||| ||| ||||||| |
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| T |
8358591 |
acatatgaattttcaagcttcaaatctaagattcatatgcaaacatatatgaaagaccgtaagtttaaagattaagaggtcataagaaaaaaaatcatgg |
8358492 |
T |
|
| Q |
173 |
atttaaaacttgaatattcatat |
195 |
Q |
| |
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| ||||| |||||| |||||||| |
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|
| T |
8358491 |
aattaaagcttgaaaattcatat |
8358469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 217
Target Start/End: Original strand, 22399105 - 22399247
Alignment:
| Q |
78 |
atgaattatcaagctccaaatcta-gattcatatgcaaacttggatgaaagaccataaatctaaagactgagaggtcacaaggaaataaatc-atacatt |
175 |
Q |
| |
|
||||||| ||||||| |||||||| |||||| ||| |||| | | ||||||||||||||| | || ||||||||||||| || || |||| | ||| ||| |
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|
| T |
22399105 |
atgaattttcaagcttcaaatctaagattcaaatgtaaacataggtgaaagaccataaattttaaaactgagaggtcactagaaattaaaacaatatatt |
22399204 |
T |
|
| Q |
176 |
taaaacttgaatattcatat-caaatggatcaaaagggcaaaa |
217 |
Q |
| |
|
| || |||||| |||||||| |||||| | |||||| |||||| |
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|
| T |
22399205 |
tgaagcttgaaaattcatatgcaaatgtaccaaaagagcaaaa |
22399247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 474775 - 474683
Alignment:
| Q |
75 |
catatgaattatcaagctccaaatcta-gattcatatgcaaacttggatgaaagaccataaatctaaagactgagaggtcacaaggaaataaa |
166 |
Q |
| |
|
|||||||||| ||||||| ||||| || ||||||||||||||| ||| |||| ||||||| || | |||||||||| ||||| | ||||||| |
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|
| T |
474775 |
catatgaattttcaagcttcaaatttaagattcatatgcaaacatgggtgaaggaccatagatttgaagactgagaactcacaggaaaataaa |
474683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 195
Target Start/End: Original strand, 9253208 - 9253331
Alignment:
| Q |
75 |
catatgaattatcaagctccaaatcta-gattcatatgcaaacttggatgaaagaccataaatctaaagactgagaggtcacaag--gaaataaatcata |
171 |
Q |
| |
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|||||||||| |||||| |||||||| |||| |||| |||| | |||||||||||||| || | |||| ||||||| || || ||| |||||||| |
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| T |
9253208 |
catatgaattttcaagcatcaaatctaagatttatatcaaaacatagatgaaagaccatatatttgaagattgagaggccatgagaaaaaaaaaatcata |
9253307 |
T |
|
| Q |
172 |
catttaaaacttgaatattcatat |
195 |
Q |
| |
|
||||||| ||||||||||||||| |
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| T |
9253308 |
gatttaaagcttgaatattcatat |
9253331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 75 - 133
Target Start/End: Original strand, 45682541 - 45682600
Alignment:
| Q |
75 |
catatgaattatcaagctccaaatcta-gattcatatgcaaacttggatgaaagaccata |
133 |
Q |
| |
|
|||||||||| ||||||| |||| || ||||||||||||||| |||||||||||||||| |
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|
| T |
45682541 |
catatgaattttcaagctttaaatataagattcatatgcaaacatggatgaaagaccata |
45682600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 166
Target Start/End: Complemental strand, 41317110 - 41317018
Alignment:
| Q |
75 |
catatgaattatcaagctccaaatctaga-ttcatatgcaaacttggatgaaagaccataaatctaaagactgagaggtcacaaggaaataaa |
166 |
Q |
| |
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|||||| ||| ||||||| ||||||| | |||||| |||||| || ||||||||||||| || | |||| || ||||||||||| ||||||| |
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| T |
41317110 |
catatgtattttcaagctttaaatctaaaattcataggcaaacatgaatgaaagaccatagatttgaagattgggaggtcacaagaaaataaa |
41317018 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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