View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4345_low_5 (Length: 250)

Name: NF4345_low_5
Description: NF4345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4345_low_5
NF4345_low_5
[»] chr6 (3 HSPs)
chr6 (58-241)||(19349423-19349598)
chr6 (58-241)||(29977502-29977677)
chr6 (58-241)||(7014527-7014703)
[»] chr3 (4 HSPs)
chr3 (58-241)||(19874730-19874905)
chr3 (58-241)||(15275367-15275544)
chr3 (1-45)||(50558076-50558120)
chr3 (171-239)||(4963947-4964015)
[»] chr8 (2 HSPs)
chr8 (58-241)||(35183236-35183412)
chr8 (58-241)||(36698912-36699087)
[»] chr7 (4 HSPs)
chr7 (58-241)||(27219607-27219780)
chr7 (1-46)||(21869766-21869811)
chr7 (1-46)||(21870526-21870571)
chr7 (7-45)||(46465670-46465708)
[»] scaffold0027 (1 HSPs)
scaffold0027 (58-241)||(139421-139597)
[»] chr5 (4 HSPs)
chr5 (169-233)||(26904614-26904678)
chr5 (88-149)||(8379725-8379786)
chr5 (1-45)||(8316010-8316054)
chr5 (174-230)||(27679695-27679751)
[»] chr2 (3 HSPs)
chr2 (1-45)||(11124768-11124812)
chr2 (1-45)||(10164416-10164460)
chr2 (181-230)||(1159445-1159494)
[»] chr1 (4 HSPs)
chr1 (58-230)||(28357366-28357533)
chr1 (4-46)||(32518343-32518385)
chr1 (1-45)||(38858429-38858473)
chr1 (7-46)||(50524729-50524768)
[»] scaffold0321 (1 HSPs)
scaffold0321 (165-230)||(17672-17737)
[»] chr4 (1 HSPs)
chr4 (174-230)||(9690008-9690064)


Alignment Details
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 58 - 241
Target Start/End: Original strand, 19349423 - 19349598
Alignment:
Q  58 aaatcaaaatgaaatataataacttcggccgtgtaacactcctaggtacaaggtgtaccaaagaagccactccgataaaaaacagtcatacagtcataca 157  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||        |||||||||||    
T  19349423 aaatcaaaatgaaatatattaacttcggccgtgtaacactcctaggtacaaggtgtaccaaagaagccactccgataagaa--------acagtcataca 19349514  T
Q  158 aaaataccaaaaatcagtcgattcccaaacattgtaaagggtccgaccaccaattatgagaaccatacacaaacatagtattat 241  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19349515 aaaataccaaaaatcagtcgattcctaaacactgtaaagggtccgaccaccaattatgagaaccatacacaaacgtagtattat 19349598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 29977677 - 29977502
Alignment:
Q  58 aaatcaaaatgaaatataataacttcggccgtgtaacactcctaggtacaaggtgtaccaaagaagccactccgataaaaaacagtcatacagtcataca 157  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||        ||||    
T  29977677 aaatcaaaatgaaatatattaacttcggccgtgtaacactcctaggtacaaggtgtaccaaagaagccactccgataagaaacagtca--------taca 29977586  T
Q  158 aaaataccaaaaatcagtcgattcccaaacattgtaaagggtccgaccaccaattatgagaaccatacacaaacatagtattat 241  Q
    ||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  29977585 aaaataccaaaaatcagtcgattcccaaacactataaagagtccgaccaccaattgtgagaaccatacacaaacatagtattat 29977502  T

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Target: chr6; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 58 - 241
Target Start/End: Original strand, 7014527 - 7014703
Alignment:
Q  58 aaatcaaaatgaaatataataacttcggccgtgtaacactcctaggtacaaggtgtaccaaagaagccactccgataaaaaacagtcatacagtcataca 157  Q
    |||||||||||||||||| ||||   |||||||||||||||||||||||||| ||||||||||||||||| |||| |  |||||||||||||       |    
T  7014527 aaatcaaaatgaaatatattaacaatggccgtgtaacactcctaggtacaagatgtaccaaagaagccaccccgagatcaaacagtcataca-------a 7014619  T
Q  158 aaaataccaaaaatcagtcgattcccaaacattgtaaagggtccgaccaccaattatgagaaccatacacaaacatagtattat 241  Q
    ||| || ||| | ||||||||| |||||||||| |||| | || ||||||||||||||||| ||||||||||||||| ||||||    
T  7014620 aaattatcaatagtcagtcgatacccaaacattataaaagatctgaccaccaattatgagagccatacacaaacataatattat 7014703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 58 - 241
Target Start/End: Original strand, 19874730 - 19874905
Alignment:
Q  58 aaatcaaaatgaaatataataacttcggccgtgtaacactcctaggtacaaggtgtaccaaagaagccactccgataaaaaacagtcatacagtcataca 157  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||        |||||||    
T  19874730 aaatcaaaatgaaatagaataacttcggccgtgtaacactcctaggtacaaggtgtactaaagaagccactccgataagaaacag--------tcataca 19874821  T
Q  158 aaaataccaaaaatcagtcgattcccaaacattgtaaagggtccgaccaccaattatgagaaccatacacaaacatagtattat 241  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  19874822 aaaataccaaaaatcagtcgattcccaaacactgtaaagggtccgaacaccaattatgagaaccatacacaaacatagtattat 19874905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 58 - 241
Target Start/End: Original strand, 15275367 - 15275544
Alignment:
Q  58 aaatcaaaatgaaatataataacttcggccgtgtaacactcctaggtacaaggtgtaccaaagaagccactccgataaaaaacagtcatacagtcataca 157  Q
    |||||||||||||||||| |||   ||| |||||||||||||||||||||||||||||||||  |||||| ||||||  |||||||||||||       |    
T  15275367 aaatcaaaatgaaatatattaagaacggtcgtgtaacactcctaggtacaaggtgtaccaaaagagccaccccgatagcaaacagtcatacaa------a 15275460  T
Q  158 aaaataccaaaaatcagtcgattcccaaacattgtaaagggtccgaccaccaattatgagaaccatacacaaacatagtattat 241  Q
    ||| |||||| | ||||||||| |||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15275461 aaattaccaatagtcagtcgatacccaaacactataaagggtccgactaccaattatgagaaccatacacaaacatagtattat 15275544  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 50558076 - 50558120
Alignment:
Q  1 gataaaacatattcaaataagatatcaaatacaaaatcattaaat 45  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  50558076 gataaaacataatcaaataagatatcaaatacaaaatcattaaat 50558120  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 4963947 - 4964015
Alignment:
Q  171 tcagtcgattcccaaacattgtaaagggtccgaccaccaattatgagaaccatacacaaacatagtatt 239  Q
    ||||||||| |||| |||  |||||||||||||||||||  | |||||||| ||||||||  |||||||    
T  4963947 tcagtcgatacccagacaaagtaaagggtccgaccaccatctctgagaaccgtacacaaaagtagtatt 4964015  T

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Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 35183412 - 35183236
Alignment:
Q  58 aaatcaaaatgaaatataataacttcggccgtgtaacactcctaggtacaaggtgtaccaaagaagccactccgataaaaaacagtcatacagtcataca 157  Q
    |||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||       |    
T  35183412 aaatcaaaatgaaatatattaacgtcggccgtgtaacactcctagatacaaggtgtaccaaagaagccactccgataataaacagtcataca-------a 35183320  T
Q  158 aaaataccaaaaatcagtcgattcccaaacattgtaaagggtccgaccaccaattatgagaaccatacacaaacatagtattat 241  Q
    ||||||||| || ||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35183319 aaaataccagaagtcagtcgatacccaaacactgtaaagggtccgaccaccaattatgagaatcatacacaaacatagtattat 35183236  T

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Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 36699087 - 36698912
Alignment:
Q  58 aaatcaaaatgaaatataataacttcggccgtgtaacactcctaggtacaaggtgtaccaaagaagccactccgataaaaaacagtcatacagtcataca 157  Q
    |||||||||||||||||| ||||  |||||||||||||||| ||||||||||||||| |||||||||||| |||||| ||| || |||||||       |    
T  36699087 aaatcaaaatgaaatatattaacaacggccgtgtaacactcttaggtacaaggtgtatcaaagaagccaccccgatataaa-caatcataca-------a 36698996  T
Q  158 aaaataccaaaaatcagtcgattcccaaacattgtaaagggtccgaccaccaattatgagaaccatacacaaacatagtattat 241  Q
    ||| |||||| | ||||||||| |||||||| ||||||||||||||| |||||||||||||  |||||||||||||||||||||    
T  36698995 aaattaccaatagtcagtcgatacccaaacactgtaaagggtccgactaccaattatgagagtcatacacaaacatagtattat 36698912  T

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Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 27219780 - 27219607
Alignment:
Q  58 aaatcaaaatgaaatataataacttcggccgtgtaacactcctaggtacaaggtgtaccaaagaagccactccgataaaaaacagtcatacagtcataca 157  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||         ||||||||||    
T  27219780 aaatcaaaatgagata-aataacttcggccgtgtaacactcctaggtataaggtgtaccaaagaagccactccgataagaa---------cagtcataca 27219691  T
Q  158 aaaataccaaaaatcagtcgattcccaaacattgtaaagggtccgaccaccaattatgagaaccatacacaaacatagtattat 241  Q
    |||||||| |||||||||||| ||||||||| |||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  27219690 aaaatacctaaaatcagtcgagtcccaaacactgtataggatccgaccaccaaatatgagaaccatacacaaacatagtattat 27219607  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21869766 - 21869811
Alignment:
Q  1 gataaaacatattcaaataagatatcaaatacaaaatcattaaata 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  21869766 gataaaacatattcaaataagatatcaaatacaaaatcattaaata 21869811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 21870526 - 21870571
Alignment:
Q  1 gataaaacatattcaaataagatatcaaatacaaaatcattaaata 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  21870526 gataaaacatattcaaataagatatcaaatacaaaatcattaaata 21870571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 46465708 - 46465670
Alignment:
Q  7 acatattcaaataagatatcaaatacaaaatcattaaat 45  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  46465708 acatattcaaataaaatatcaaatacaaaatcattaaat 46465670  T

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Target: scaffold0027 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 58 - 241
Target Start/End: Complemental strand, 139597 - 139421
Alignment:
Q  58 aaatcaaaatgaaatataataacttcggccgtgtaacactcctaggtacaaggtgtaccaaagaagccactccgataaaaaacagtcatacagtcataca 157  Q
    |||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||| |||| |  |||||||||||||       |    
T  139597 aaatcaaaatgaaatatattaacaacggccgtgtaacactcctaggtacaaggtgtaccaaagaagccaccccgagatcaaacagtcataca-------a 139505  T
Q  158 aaaataccaaaaatcagtcgattcccaaacattgtaaagggtccgaccaccaattatgagaaccatacacaaacatagtattat 241  Q
    ||| |||||| | ||||||||| |||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||||||    
T  139504 aaattaccaatagtcagtcgatacccaaacactgtaaaggatccgaccaccaattatgagagccatatacaaacatagtattat 139421  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 26904678 - 26904614
Alignment:
Q  169 aatcagtcgattcccaaacattgtaaagggtccgaccaccaattatgagaaccatacacaaacat 233  Q
    ||||||||||| |||||||| |||||| |||||||||||||| | ||||||||||||||||||||    
T  26904678 aatcagtcgatacccaaacaatgtaaatggtccgaccaccaactctgagaaccatacacaaacat 26904614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 8379725 - 8379786
Alignment:
Q  88 gtgtaacactcctaggtacaaggtgtaccaaagaagccactccgataaaaaacagtcataca 149  Q
    ||||||||||| || |||||||||||||||||| |||||| ||| ||  ||| |||||||||    
T  8379725 gtgtaacactcgtaagtacaaggtgtaccaaaggagccaccccggtagcaaatagtcataca 8379786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 8316054 - 8316010
Alignment:
Q  1 gataaaacatattcaaataagatatcaaatacaaaatcattaaat 45  Q
    ||||||| |||| ||||||| ||||||||||| ||||||||||||    
T  8316054 gataaaatatatccaaataaaatatcaaatactaaatcattaaat 8316010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 27679751 - 27679695
Alignment:
Q  174 gtcgattcccaaacattgtaaagggtccgaccaccaattatgagaaccatacacaaa 230  Q
    |||||| ||||||||| | | ||||||||||||||| || |||||||| ||||||||    
T  27679751 gtcgatacccaaacatagcatagggtccgaccaccatttctgagaaccgtacacaaa 27679695  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 11124768 - 11124812
Alignment:
Q  1 gataaaacatattcaaataagatatcaaatacaaaatcattaaat 45  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  11124768 gataaaacatattcagataagatatcaaatacaaaatcattaaat 11124812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10164460 - 10164416
Alignment:
Q  1 gataaaacatattcaaataagatatcaaatacaaaatcattaaat 45  Q
    ||||||||||||||  |||| ||||||||||||||||||||||||    
T  10164460 gataaaacatattcggataaaatatcaaatacaaaatcattaaat 10164416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 1159494 - 1159445
Alignment:
Q  181 cccaaacattgtaaagggtccgaccaccaattatgagaaccatacacaaa 230  Q
    |||||||| | |||||||| |||||||||||| |||||||| ||||||||    
T  1159494 cccaaacaatataaagggttcgaccaccaattttgagaaccgtacacaaa 1159445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 230
Target Start/End: Original strand, 28357366 - 28357533
Alignment:
Q  58 aaatcaaaatgaaatataataacttcggccgtgtaacactcctaggtacaaggtgtaccaaagaagccactccgataaaaaacagtcatacagtcataca 157  Q
    |||| ||||||  ||||| ||||  |||| |||||| ||||||| |||||||||||||||||| || ||| |||  ||  ||||||||||||     |      
T  28357366 aaattaaaatgggatatattaacaacggcggtgtaaaactcctaagtacaaggtgtaccaaaggagtcaccccggaaaccaacagtcataca-----aag 28357460  T
Q  158 aaaataccaaaaatcagtcgattcccaaacattgtaaagggtccgaccaccaattatgagaaccatacacaaa 230  Q
    ||  ||| | |||||||||||| |||||||| ||||| ||||| |||||||||||||||||||  ||||||||    
T  28357461 aatttacaacaaatcagtcgatacccaaacaatgtaaggggtctgaccaccaattatgagaactgtacacaaa 28357533  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 46
Target Start/End: Complemental strand, 32518385 - 32518343
Alignment:
Q  4 aaaacatattcaaataagatatcaaatacaaaatcattaaata 46  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  32518385 aaaacatattcaaataaaatatcaaatacaaaatcattaaata 32518343  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 38858473 - 38858429
Alignment:
Q  1 gataaaacatattcaaataagatatcaaatacaaaatcattaaat 45  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||    
T  38858473 gataaaacacattcaaataagatatcaaatacaaattcattaaat 38858429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 50524729 - 50524768
Alignment:
Q  7 acatattcaaataagatatcaaatacaaaatcattaaata 46  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  50524729 acatattcaaataaaatatcaaatacaaaatcattaaata 50524768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 17737 - 17672
Alignment:
Q  165 caaaaatcagtcgattcccaaacattgtaaagggtccgaccaccaattatgagaaccatacacaaa 230  Q
    ||||| ||||||||| |||||||| || |||||||||||||||||| | |||| ||| ||||||||    
T  17737 caaaagtcagtcgatacccaaacaatgcaaagggtccgaccaccaactctgagtaccgtacacaaa 17672  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 9690008 - 9690064
Alignment:
Q  174 gtcgattcccaaacattgtaaagggtccgaccaccaattatgagaaccatacacaaa 230  Q
    |||||| ||||||||  ||||||||| |||||||||  | |||||||||||||||||    
T  9690008 gtcgatacccaaacaaagtaaagggttcgaccaccatctttgagaaccatacacaaa 9690064  T

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