View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4345_low_8 (Length: 238)

Name: NF4345_low_8
Description: NF4345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4345_low_8
NF4345_low_8
[»] chr2 (10 HSPs)
chr2 (1-117)||(10164454-10164570)
chr2 (8-124)||(2473020-2473135)
chr2 (1-120)||(11124650-11124774)
chr2 (155-223)||(2472921-2472989)
chr2 (153-223)||(11124552-11124622)
chr2 (1-84)||(36599676-36599758)
chr2 (1-74)||(16113324-16113397)
chr2 (163-223)||(10164622-10164682)
chr2 (1-85)||(16319201-16319285)
chr2 (1-86)||(2280633-2280717)
[»] chr1 (8 HSPs)
chr1 (1-117)||(38858467-38858583)
chr1 (46-103)||(50524669-50524726)
chr1 (1-86)||(34540677-34540761)
chr1 (153-223)||(38858614-38858690)
chr1 (63-124)||(32518431-32518494)
chr1 (1-86)||(32823288-32823372)
chr1 (163-223)||(32518528-32518588)
chr1 (1-41)||(32518382-32518422)
[»] chr7 (6 HSPs)
chr7 (1-124)||(21869643-21869772)
chr7 (1-108)||(21870420-21870532)
chr7 (46-124)||(46465711-46465791)
chr7 (4-86)||(35791232-35791313)
chr7 (4-86)||(31319963-31320044)
chr7 (1-86)||(5783185-5783268)
[»] chr3 (4 HSPs)
chr3 (1-94)||(50557989-50558082)
chr3 (153-223)||(50557855-50557925)
chr3 (1-78)||(27152175-27152252)
chr3 (4-86)||(23516171-23516252)
[»] chr5 (6 HSPs)
chr5 (1-118)||(8316048-8316164)
chr5 (1-86)||(798210-798296)
chr5 (1-78)||(33870020-33870097)
chr5 (1-86)||(8283459-8283543)
chr5 (4-86)||(1919202-1919283)
chr5 (1-86)||(19572464-19572544)
[»] chr8 (3 HSPs)
chr8 (1-85)||(4285334-4285418)
chr8 (1-78)||(6799204-6799281)
chr8 (1-86)||(7940056-7940140)
[»] chr6 (2 HSPs)
chr6 (1-86)||(9960503-9960587)
chr6 (1-86)||(20969124-20969208)
[»] chr4 (3 HSPs)
chr4 (1-86)||(43005655-43005739)
chr4 (1-86)||(7575771-7575855)
chr4 (1-29)||(36606022-36606050)
[»] scaffold0127 (1 HSPs)
scaffold0127 (1-86)||(23367-23451)
[»] scaffold0009 (2 HSPs)
scaffold0009 (1-65)||(3895-3959)
scaffold0009 (1-65)||(4276-4340)


Alignment Details
Target: chr2 (Bit Score: 101; Significance: 3e-50; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 10164454 - 10164570
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaaaaaatgaaagaagacaat 100  Q
    |||||||||||||||||| ||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10164454 ttttatctttgaaattgctaatttattttggactttaaaatatcttgtctttatttaattatttcaacaacttttaattaaaaaaatgaaagaagacaat 10164553  T
Q  101 atgttgagtaaaattca 117  Q
    |||||||||||||||||    
T  10164554 atgttgagtaaaattca 10164570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 2473135 - 2473020
Alignment:
Q  8 tttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaaaaaatgaaagaagacaatatgttga 107  Q
    ||||||||||| ||||||||||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  2473135 tttgaaattgctaatttattttggactttaaaatatcttgtctttgtttaattatt-caacaacttttaattaaaaaaatgaaagaagacaatatgctga 2473037  T
Q  108 gtaaaattcacgggatg 124  Q
    |||||||||||||||||    
T  2473036 gtaaaattcacgggatg 2473020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 11124774 - 11124650
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaa-----aaaatgaaagaag 95  Q
    |||||||||| ||||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||     |||||||||||||    
T  11124774 ttttatctttcaaattgccaatttattttggactttaaaatatcttgtctttgtttaattatttcaacaacttttaattaaaaaaaaaaaatgaaagaag 11124675  T
Q  96 acaatatgttgagtaaaattcacgg 120  Q
    |||||||| ||||||||||||||||    
T  11124674 acaatatgctgagtaaaattcacgg 11124650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 2472989 - 2472921
Alignment:
Q  155 cacaggagaaaacaatactgttgtgaggaaaatttacaagaagaattcaaataatattatgtttctatt 223  Q
    ||||||| |||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2472989 cacaggaaaaaacaattctattgtgagaaaaatttacaagaagaattcaaataatattatgtttctatt 2472921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 11124622 - 11124552
Alignment:
Q  153 ttcacaggagaaaacaatactgttgtgaggaaaatttacaagaagaattcaaataatattatgtttctatt 223  Q
    ||||| ||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  11124622 ttcacgggaaaaaacaatattgttatgaggaaaatttacaagaagaattcaaataatattatatttctatt 11124552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 36599676 - 36599758
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaaaa 84  Q
    ||||||||||  |||||||||||||||||||||| || |||||| |||||| ||||| ||||||| ||| ||||||||||||||    
T  36599676 ttttatctttataattgcaaatttattttggactatataatatt-tgtcttagtttatttatttctacagcttttaattaaaaa 36599758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 16113397 - 16113324
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttt 74  Q
    ||||||||||| ||||||||||||||||||||||||| ||| | ||||||| |||| ||||| || ||||||||    
T  16113397 ttttatctttggaattgcaaatttattttggactttataatttcatgtcttagtttgattatatctacaacttt 16113324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 10164622 - 10164682
Alignment:
Q  163 aaaacaatactgttgtgaggaaaatttacaagaagaattcaaataatattatgtttctatt 223  Q
    ||||||||| |||| ||||||||| ||||| ||||||||||||||||||||| ||||||||    
T  10164622 aaaacaatattgttatgaggaaaacttacacgaagaattcaaataatattatatttctatt 10164682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 16319201 - 16319285
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaaaaa 85  Q
    ||||||||||||||||||||||||||||||||||||  ||| |  |||||| || |||||||||| ||||| || ||| ||||||    
T  16319201 ttttatctttgaaattgcaaatttattttggactttctaatttcttgtcttagtctaattatttctacaacattaaataaaaaaa 16319285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 2280633 - 2280717
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaaaaaa 86  Q
    |||| |||||| |||||||||||||||||||||| || ||| || ||||||  |||||||||||  ||| ||||||||||||||||    
T  2280633 ttttgtctttgtaattgcaaatttattttggactatataatgtt-tgtcttattttaattatttatacagcttttaattaaaaaaa 2280717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 8e-48; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 38858467 - 38858583
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaaaaaatgaaagaagacaat 100  Q
    ||||||||||| |||||| ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38858467 ttttatctttggaattgctaatttattttggactttaaaatatcttgtctttgtttaattatttcaacaacttttaattaaaaaaatgaaagaagacaat 38858566  T
Q  101 atgttgagtaaaattca 117  Q
    ||| |||||||||||||    
T  38858567 atgctgagtaaaattca 38858583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 103
Target Start/End: Complemental strand, 50524726 - 50524669
Alignment:
Q  46 tgtctttgtttaattatttcaacaacttttaattaaaaaaatgaaagaagacaatatg 103  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  50524726 tgtcttagtttaattatttcaacaacttttaatttaaaaaatgaaagaaaacaatatg 50524669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 34540761 - 34540677
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaaaaaa 86  Q
    |||| |||||| |||||||||||||||||||||| || ||| || ||||||  |||||||||||| ||| ||||||||||||||||    
T  34540761 ttttttctttgtaattgcaaatttattttggactatataatgtt-tgtcttattttaattatttctacagcttttaattaaaaaaa 34540677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 223
Target Start/End: Original strand, 38858614 - 38858690
Alignment:
Q  153 ttcacaggagaaaacaatactgttgtgag------gaaaatttacaagaagaattcaaataatattatgtttctatt 223  Q
    ||||||||| |||||||||||||||||||      ||||||||| |||||||||| |||||||||||||||||||||    
T  38858614 ttcacaggaaaaaacaatactgttgtgaggatgaggaaaatttataagaagaattaaaataatattatgtttctatt 38858690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 32518431 - 32518494
Alignment:
Q  63 ttcaacaacttttaattaaaaaaatgaaagaagacaatatg--ttgagtaaaattcacgggatg 124  Q
    |||||||| ||||||||||||||||||||||||||||||||   ||||| ||||||||||||||    
T  32518431 ttcaacaaattttaattaaaaaaatgaaagaagacaatatgctctgagttaaattcacgggatg 32518494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 32823372 - 32823288
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaaaaaa 86  Q
    ||||||||||| ||||| |||||||||||||||| || ||| || ||||||  |||||||||||  ||| ||||||||||||||||    
T  32823372 ttttatctttgtaattgtaaatttattttggactatataatgtt-tgtcttattttaattatttatacagcttttaattaaaaaaa 32823288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 32518528 - 32518588
Alignment:
Q  163 aaaacaatactgttgtgaggaaaatttacaagaagaattcaaataatattatgtttctatt 223  Q
    ||||||||| ||||| |||||||||| | |||||||| | |||||||||||||||||||||    
T  32518528 aaaacaataatgttgcgaggaaaattcagaagaagaaattaaataatattatgtttctatt 32518588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 32518382 - 32518422
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaat 41  Q
    |||| ||||||||||||| ||||||||||||||||||||||    
T  32518382 ttttttctttgaaattgctaatttattttggactttaaaat 32518422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 21869772 - 21869643
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaatt------aaaaaaatgaaagaa 94  Q
    |||||||||||||||| | ||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||      |||||||||||||||    
T  21869772 ttttatctttgaaattactaatttattttggactttaaaatatcctatctttgtttaattatttcaacaacttttaattaaaataaaaaaaatgaaagaa 21869673  T
Q  95 gacaatatgttgagtaaaattcacgggatg 124  Q
    ||||||||| | ||||||||||||||||||    
T  21869672 gacaatatgctaagtaaaattcacgggatg 21869643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 21870532 - 21870420
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaatt-----aaaaaaatgaaagaag 95  Q
    |||||||||||||||| | ||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||     ||||||||||||||||    
T  21870532 ttttatctttgaaattactaatttattttggactttaaaatatcctatctttgtttaattatttcaacaacttttaattaaaataaaaaaatgaaagaag 21870433  T
Q  96 acaatatgttgag 108  Q
    |||||||| ||||    
T  21870432 acaatatgctgag 21870420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 124
Target Start/End: Original strand, 46465711 - 46465791
Alignment:
Q  46 tgtctttgtttaattatttcaacaacttttaattaaaaaaatgaaagaagacaatatg--ttgagtaaaattcacgggatg 124  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||   | ||||||||||||||||||    
T  46465711 tgtcttagtttaattatttcaacaacttttaattaaaaaaatgaaagaaaacaatatgctctaagtaaaattcacgggatg 46465791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 35791232 - 35791313
Alignment:
Q  4 tatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaaaaaa 86  Q
    |||||||| |||||||||||||||||||||| || ||| || ||||||  |||||||||||| ||||||||||||| ||||||    
T  35791232 tatctttgtaattgcaaatttattttggactatataatgtt-tgtcttattttaattatttctacaacttttaatttaaaaaa 35791313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 31319963 - 31320044
Alignment:
Q  4 tatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaaaaaa 86  Q
    |||||||| |||||||||||||||||||||| || ||| || ||||||  |||| ||||||| ||||||||||||| ||||||    
T  31319963 tatctttgtaattgcaaatttattttggactatataatgtt-tgtcttattttatttatttctacaacttttaatttaaaaaa 31320044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 5783268 - 5783185
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaaaaaa 86  Q
    ||||||||||| ||||||||||||||||||||| ||| ||| || | ||||  |||||||||||| ||| ||||| ||||||||||    
T  5783268 ttttatctttgtaattgcaaatttattttggac-ttataatgtt-tctcttattttaattatttctacagcttttcattaaaaaaa 5783185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 50558082 - 50557989
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaaaaaatgaaagaa 94  Q
    |||||||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  50558082 ttttatctttgaaattgctaatttattttggactttaaaatatcttgtctttgtttaattatttcaataacttttaattaaaaaaatgaaagaa 50557989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 153 - 223
Target Start/End: Complemental strand, 50557925 - 50557855
Alignment:
Q  153 ttcacaggagaaaacaatactgttgtgaggaaaatttacaagaagaattcaaataatattatgtttctatt 223  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  50557925 ttcacaggaaaaaacaatactgttgtgaggaaaatttacaagaagaattcaaataatattaggtttctatt 50557855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 27152175 - 27152252
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaat 78  Q
    ||||||||||| ||||||||||||||||||||||||| ||| |  |||||| ||||||||||||  ||||||||||||    
T  27152175 ttttatctttggaattgcaaatttattttggactttataatttcttgtcttagtttaattatttttacaacttttaat 27152252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 23516171 - 23516252
Alignment:
Q  4 tatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaaaaaa 86  Q
    |||||||| |||||||||||||||||||||| || ||| || ||||||  |||| ||||||| ||||||||||||| ||||||    
T  23516171 tatctttgtaattgcaaatttattttggactatataatgtt-tgtcttattttatttatttctacaacttttaatttaaaaaa 23516252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 8316048 - 8316164
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaaaaaatgaaagaagacaat 100  Q
    |||||||||||||||||| |||||||||||||||||||| |||  |||||||||  |||||||||  ||||||||||||||||||||||||||| |||||    
T  8316048 ttttatctttgaaattgctaatttattttggactttaaa-tatcttgtctttgt--aattatttctgcaacttttaattaaaaaaatgaaagaaaacaat 8316144  T
Q  101 atg--ttgagtaaaattcac 118  Q
    |||  ||||| |||||||||    
T  8316145 atgctttgaggaaaattcac 8316164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 798296 - 798210
Alignment:
Q  1 ttttatctttgaaattgcaaa-tttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaaaaaa 86  Q
    ||||||||||| ||||||||| |||||||||||||||| ||| | ||||||| ||||||||||||| |||||||||||| |||||||    
T  798296 ttttatctttggaattgcaaaatttattttggactttataatttcatgtcttagtttaattatttctacaacttttaataaaaaaaa 798210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 33870020 - 33870097
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaat 78  Q
    ||||||||||  ||||||||||||||||||||||||| ||| |  |||||| ||||||||||||||||||||||||||    
T  33870020 ttttatctttagaattgcaaatttattttggactttataatttcttgtcttagtttaattatttcaacaacttttaat 33870097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 8283543 - 8283459
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaaaaaa 86  Q
    ||||||||||| |||||||||||||||||||||| || ||| || ||||||  |||||||||||| ||| ||||||||||||||||    
T  8283543 ttttatctttgtaattgcaaatttattttggactatataatgtt-tgtcttattttaattatttctacagcttttaattaaaaaaa 8283459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 1919202 - 1919283
Alignment:
Q  4 tatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaaaaaa 86  Q
    |||||||| |||||||||||||||||||||| || ||| || ||||||  |||||||||||| ||||||||||||| ||||||    
T  1919202 tatctttgtaattgcaaatttattttggactatataatgtt-tgtcttattttaattatttctacaacttttaatttaaaaaa 1919283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 19572544 - 19572464
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaaaaaa 86  Q
    ||||||||||| ||||||||||||||||||||||    | | || ||||||  |||||||||||| ||| ||||||||||||||||    
T  19572544 ttttatctttgtaattgcaaatttattttggact----agtgtt-tgtcttattttaattatttctacagcttttaattaaaaaaa 19572464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 4285334 - 4285418
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaaaaa 85  Q
    ||||||||||| ||||||||||||||||||||||||| ||| |  |||||| ||||||||||||| |||||||||||| ||||||    
T  4285334 ttttatctttggaattgcaaatttattttggactttataatttcttgtcttagtttaattatttctacaacttttaataaaaaaa 4285418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 6799281 - 6799204
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaat 78  Q
    ||||||||||| ||||||||||||||||||||||||| ||| |  |||||| ||||||||||||| ||||||||||||    
T  6799281 ttttatctttggaattgcaaatttattttggactttataatttcttgtcttagtttaattatttctacaacttttaat 6799204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 7940140 - 7940056
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaaaaaa 86  Q
    ||||||||||| |||||||||||||||||||||| || ||| || ||||||  |||||||||||| ||| ||||||||||||||||    
T  7940140 ttttatctttgtaattgcaaatttattttggactatataatgtt-tgtcttattttaattatttctacagcttttaattaaaaaaa 7940056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 9960503 - 9960587
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaaaaaa 86  Q
    ||||||||||| |||||||||||||||||||||| || ||| || ||||||  |||||| ||||| ||||||||||||||||||||    
T  9960503 ttttatctttgtaattgcaaatttattttggactatataatgtt-tgtcttattttaataatttctacaacttttaattaaaaaaa 9960587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 20969124 - 20969208
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaaaaaa 86  Q
    ||||||||||| |||| ||||||||||||||||| || ||| || ||||||  ||||| |||||| ||||||||||||||||||||    
T  20969124 ttttatctttgtaattacaaatttattttggactatataatgtt-tgtcttattttaactatttctacaacttttaattaaaaaaa 20969208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 43005655 - 43005739
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaaaaaa 86  Q
    ||||||||||| |||||||||||||||||||||| ||  || || ||||||  |||||||||||| ||||||||||||||||||||    
T  43005655 ttttatctttgtaattgcaaatttattttggactatatgatgtt-tgtcttattttaattatttctacaacttttaattaaaaaaa 43005739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 7575771 - 7575855
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaaaaaa 86  Q
    ||||||||||| |||||||||||||||||||||| || ||| || ||| ||  |||||||||||| |||  |||||||||||||||    
T  7575771 ttttatctttgtaattgcaaatttattttggactatataatgtt-tgttttattttaattatttctacattttttaattaaaaaaa 7575855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 36606022 - 36606050
Alignment:
Q  1 ttttatctttgaaattgcaaatttatttt 29  Q
    |||||||||||||||||||||||||||||    
T  36606022 ttttatctttgaaattgcaaatttatttt 36606050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 23451 - 23367
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttcaacaacttttaattaaaaaaa 86  Q
    ||||||||||| |||| ||||||||||||||||| || ||| || ||||||  ||||| |||||| ||||||||||||||||||||    
T  23451 ttttatctttgtaattacaaatttattttggactatataatgtt-tgtcttattttaactatttctacaacttttaattaaaaaaa 23367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3959 - 3895
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttc 65  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||  ||||||||| ||||||||||    
T  3959 ttttatctttgaaattgctaatttgttttgaactttaaaatatcttgtctttgtgtaattatttc 3895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 4340 - 4276
Alignment:
Q  1 ttttatctttgaaattgcaaatttattttggactttaaaatattatgtctttgtttaattatttc 65  Q
    |||||||||||||||||| ||||| ||||| ||||||||||||  ||||||||| ||||||||||    
T  4340 ttttatctttgaaattgctaatttgttttgaactttaaaatatcttgtctttgtgtaattatttc 4276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University