View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4345_low_9 (Length: 237)
Name: NF4345_low_9
Description: NF4345
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4345_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 53278767 - 53278993
Alignment:
| Q |
1 |
atgaaaatattgaacttctgggttataggattctagataatataacttaaactcctaatccaatgacaatttctttaaaactattattcactaacgtta- |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
53278767 |
atgaaaatattgaacttctgggttataggattctagataatataacttaaactcttaatccaatgacaatttctataaaactattattcactaacgttat |
53278866 |
T |
|
| Q |
100 |
-------ttgagtagtgttgaaaagagagtgtcactagcattaaatccaaaattatgatattatattattcttgcaaagtttgttgagaaactatttgtt |
192 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
53278867 |
tgagttattgagtagtgttgaaaagagagtctcactagcattaaatccaaaattatggtattatattattcttggaaagtttgttgagaaactatttgtt |
53278966 |
T |
|
| Q |
193 |
ttcattaggtataaaattgatctgaaa |
219 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
53278967 |
ttcattaggtataaaattgatctgaaa |
53278993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 11835884 - 11835687
Alignment:
| Q |
1 |
atgaaaatattgaacttctgggttataggattctagat--------aatataacttaaactcctaatccaatgacaatttctttaaaactattattcact |
92 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
11835884 |
atgaaaatattgaacttctgggttataggattctagatcctccactaatataacttaaactcttaatccaatgacaatttctataaaactattattcact |
11835785 |
T |
|
| Q |
93 |
aacgttattgagtagtgttgaaaagagagtgtcactagcattaaatccaaaattatgatattatattattcttgcaaagtttgttgagaaactatttg |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11835784 |
aacgttattgagtagtgttgaaaagagagtgtcactagcattaaatccaaaattatggtattatattattcttgcaaagtttgttgagaaactatttg |
11835687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University