View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4346-Insertion-1 (Length: 750)

Name: NF4346-Insertion-1
Description: NF4346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4346-Insertion-1
NF4346-Insertion-1
[»] chr5 (22 HSPs)
chr5 (8-344)||(33903998-33904334)
chr5 (550-750)||(33904573-33904773)
chr5 (569-734)||(33763363-33763528)
chr5 (570-724)||(33734534-33734688)
chr5 (577-712)||(33867039-33867174)
chr5 (409-485)||(33904399-33904475)
chr5 (568-712)||(33749004-33749148)
chr5 (409-484)||(33679819-33679894)
chr5 (583-713)||(33698707-33698837)
chr5 (410-484)||(33865891-33865965)
chr5 (409-484)||(33698536-33698611)
chr5 (568-712)||(33821799-33821943)
chr5 (409-484)||(33734307-33734382)
chr5 (409-483)||(33762769-33762843)
chr5 (409-484)||(33821637-33821712)
chr5 (257-343)||(33865735-33865821)
chr5 (93-205)||(33821339-33821451)
chr5 (409-484)||(33748779-33748854)
chr5 (409-484)||(33834899-33834974)
chr5 (592-712)||(33680120-33680240)
chr5 (274-316)||(33748641-33748683)
chr5 (274-316)||(33834761-33834803)
[»] scaffold0001 (3 HSPs)
scaffold0001 (8-344)||(148395-148719)
scaffold0001 (576-749)||(149000-149173)
scaffold0001 (413-485)||(148788-148860)
[»] chr7 (2 HSPs)
chr7 (551-713)||(5470128-5470290)
chr7 (413-485)||(5471193-5471265)
[»] chr8 (3 HSPs)
chr8 (572-713)||(21306037-21306178)
chr8 (409-484)||(21305875-21305950)
chr8 (6-193)||(21305517-21305701)
[»] scaffold0247 (2 HSPs)
scaffold0247 (566-715)||(21871-22020)
scaffold0247 (410-483)||(22155-22228)
[»] scaffold0023 (2 HSPs)
scaffold0023 (592-715)||(90068-90191)
scaffold0023 (409-484)||(114207-114282)
[»] scaffold0193 (2 HSPs)
scaffold0193 (566-715)||(24286-24435)
scaffold0193 (409-484)||(25218-25293)


Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 8 - 344
Target Start/End: Original strand, 33903998 - 33904334
Alignment:
Q  8 tcatccacatttggaaactcagaaataaagttctcctcttgtaataaagaacctgacccaattttctcactacttttatgctcctccaagttcaataaac 107  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33903998 tcatccacatttggaaactcagaaatgaagttctcctcttgtaataaagagcctgacccaattttctcactacttttatgctcctccaagttcaataaac 33904097  T
Q  108 cgtcccaccacattgcacatggtattggagcattaccaagacttggttgtgaaacaccaacatattctctaccaatttggtttgaatccgtaatctcttt 207  Q
     ||||||| |||||||||| |||||||||||| |||||||||||||||| ||||||||||||   |||||||||||||||||||||||||||||||||||    
T  33904098 tgtcccacaacattgcacacggtattggagcactaccaagacttggttgggaaacaccaacaatatctctaccaatttggtttgaatccgtaatctcttt 33904197  T
Q  208 attatcacgattaggcgagacttcaccgtgttgagttgaaaccaccacaattggtgtcacattaatattatgtttcccattcaacgaaggtggatgagtt 307  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  33904198 attatcacgatttggcgagacttcaccgtgttgagttgaaaccgccacaattggtgtcacattaatattatgtttccagttcaacgaaggtggatgagtt 33904297  T
Q  308 gagaaagttcgaggtttaggtttaataatttcatgaa 344  Q
    |||||||||||||||||||||||||||||||||||||    
T  33904298 gagaaagttcgaggtttaggtttaataatttcatgaa 33904334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 550 - 750
Target Start/End: Original strand, 33904573 - 33904773
Alignment:
Q  550 atgaatattaacttgtccttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttga 649  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33904573 atgaatattaacttgtccttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttga 33904672  T
Q  650 tgttggggcttaaataatttaaccacctcaatctacagctttttcggcacctattcaatcctgtcatgtgtaacatataatttaagtagttatgcatggt 749  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  33904673 tgttgggggttaaataatttaaccacctcaatctacagctttttcggcacctattcaatcctgtcatgtgtaacatataatttaagcagttatgcatggt 33904772  T
Q  750 a 750  Q
    |    
T  33904773 a 33904773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 569 - 734
Target Start/End: Original strand, 33763363 - 33763528
Alignment:
Q  569 tggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatt 668  Q
    |||||| ||||||||| ||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33763363 tggaagcttacctattacctagaagtttttgtaaccttaggatcagatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatt 33763462  T
Q  669 taaccacctcaatctacagctttttcggcacctattcaatcctgtcatgtgtaacatataatttaa 734  Q
    |||||||||||||||||| ||||||||||| ||| ||||||||| || |||||||| ||| |||||    
T  33763463 taaccacctcaatctacaactttttcggcatctactcaatcctgccaagtgtaacaaatactttaa 33763528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 570 - 724
Target Start/End: Original strand, 33734534 - 33734688
Alignment:
Q  570 ggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataattt 669  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  33734534 ggaagcttacctattccctagaagtttgtgtaaccttaggatcatatcaacttcatcctcagcaaagctttcccttttgatgttagggcataaataattt 33734633  T
Q  670 aaccacctcaatctacagctttttcggcacctattcaatcctgtcatgtgtaaca 724  Q
    | ||||||||||||||| |||||||| || ||||||||||||| || ||||||||    
T  33734634 acccacctcaatctacaactttttcgacatctattcaatcctgccaagtgtaaca 33734688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 577 - 712
Target Start/End: Original strand, 33867039 - 33867174
Alignment:
Q  577 tacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccacc 676  Q
    ||||| ||||||| ||| |||||||||||||  |||||||||||||||||||||| ||| || || || |||||| ||||| ||||||||||||||||||    
T  33867039 tacctgttccctaaaagcttgtgtaaccttaaaatcatatcaacttcatcctcagaaaaactctctctattgatggtggggtttaaataatttaaccacc 33867138  T
Q  677 tcaatctacagctttttcggcacctattcaatcctg 712  Q
    |||||||||| ||||| |||||||||||||||||||    
T  33867139 tcaatctacaacttttccggcacctattcaatcctg 33867174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 409 - 485
Target Start/End: Original strand, 33904399 - 33904475
Alignment:
Q  409 caaatgtgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcaatgaccatctaa 485  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33904399 caaatgtgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcaatgaccatctaa 33904475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 568 - 712
Target Start/End: Original strand, 33749004 - 33749148
Alignment:
Q  568 ttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataat 667  Q
    ||||||| |||||||||||| |  || ||||||||||| || ||||||||| |||||||||||| |||| |||| || |||||| | ||| |||||||||    
T  33749004 ttggaagcttacctattccccaagaggttgtgtaacctaaggatcatatcagcttcatcctcagaaaagatttctctgttgatggttgggtttaaataat 33749103  T
Q  668 ttaaccacctcaatctacagctttttcggcacctattcaatcctg 712  Q
    ||||||| ||||||||||| ||||||| ||||||||||| |||||    
T  33749104 ttaaccatctcaatctacaactttttctgcacctattcagtcctg 33749148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 409 - 484
Target Start/End: Original strand, 33679819 - 33679894
Alignment:
Q  409 caaatgtgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 484  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  33679819 caaatttgtgtgccaataattcttcacatcattagctgttctacccggaagcctcgcagcaatcaatgaccatcta 33679894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 583 - 713
Target Start/End: Original strand, 33698707 - 33698837
Alignment:
Q  583 ttccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccacctcaatc 682  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||| || || ||||| || |||||   |||| |||||||||| |||||||||||||    
T  33698707 ttccctagaagtttgtgtaaccttagaatcatatcaatttcatcctcggcgaaactttctctgttgattgcggggtttaaataattcaaccacctcaatc 33698806  T
Q  683 tacagctttttcggcacctattcaatcctgt 713  Q
    |||| ||||| || ||||||||||| |||||    
T  33698807 tacaacttttccgacacctattcaaacctgt 33698837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 410 - 484
Target Start/End: Original strand, 33865891 - 33865965
Alignment:
Q  410 aaatgtgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  33865891 aaatgtgtgtgccaataattcttcacatcattagctgttctacccgggagtcttgcagcaatcaatgaccatcta 33865965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 409 - 484
Target Start/End: Original strand, 33698536 - 33698611
Alignment:
Q  409 caaatgtgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 484  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  33698536 caaatttgtgtgccaataattcttcacatcattagctgtcctacccggaagccttgcagcaatcaaagaccatcta 33698611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 568 - 712
Target Start/End: Original strand, 33821799 - 33821943
Alignment:
Q  568 ttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataat 667  Q
    ||||||| |||||||||||| || || |||||||||||||  ||||||||| ||||||| || | || |||||| || || || || ||| |||||||||    
T  33821799 ttggaagcttacctattccccaggagattgtgtaaccttatgatcatatcagcttcatcttcggtaatgctttctctgttaatattagggtttaaataat 33821898  T
Q  668 ttaaccacctcaatctacagctttttcggcacctattcaatcctg 712  Q
    ||| ||||||||||||||| |||||||| || |||||||||||||    
T  33821899 ttacccacctcaatctacaactttttcgacatctattcaatcctg 33821943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 409 - 484
Target Start/End: Original strand, 33734307 - 33734382
Alignment:
Q  409 caaatgtgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 484  Q
    |||||||||||||||| | || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  33734307 caaatgtgtgtgccaaaagtttttcacatcattagcagttctaccaggaagccttgcagcaatcaatgaccatcta 33734382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 409 - 483
Target Start/End: Original strand, 33762769 - 33762843
Alignment:
Q  409 caaatgtgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcaatgaccatct 483  Q
    ||||| |||||||||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  33762769 caaatttgtgtgccaatagtttttcacatcattcgctgttctaccgggaagccttgcagcaatcaatgaccatct 33762843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 409 - 484
Target Start/End: Original strand, 33821637 - 33821712
Alignment:
Q  409 caaatgtgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 484  Q
    ||||||||||| |||||| || |||||||||||||| |||||||  ||||||||||||||||||||||||||||||    
T  33821637 caaatgtgtgttccaatagtttttcacatcattagccgttctactaggaagccttgcagcaatcaatgaccatcta 33821712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 257 - 343
Target Start/End: Original strand, 33865735 - 33865821
Alignment:
Q  257 attggtgtcacattaatattatgtttcccattcaacgaaggtggatgagttgagaaagttcgaggtttaggtttaataatttcatga 343  Q
    ||||||||||||  | |||||| ||||||||||||| | |||| ||||| ||| ||||||||||||| ||||||||||| |||||||    
T  33865735 attggtgtcacaaaattattatatttcccattcaaccatggtgaatgagatgaaaaagttcgaggttgaggtttaataacttcatga 33865821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 93 - 205
Target Start/End: Original strand, 33821339 - 33821451
Alignment:
Q  93 ccaagttcaataaaccgtcccaccacattgcacatggtattggagcattaccaagacttggttgtgaaacaccaacatattctctaccaatttggtttga 192  Q
    |||||||| |||||| |||| |||||||| |||||||||  ||| ||||||| |||||| |||||||| ||  | || | |||||||||||||| |||||    
T  33821339 ccaagttccataaactgtccgaccacattccacatggtacgggaacattacctagactttgttgtgaagcagaagcacaatctctaccaatttgatttga 33821438  T
Q  193 atccgtaatctct 205  Q
    | || ||||||||    
T  33821439 aaccataatctct 33821451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 409 - 484
Target Start/End: Original strand, 33748779 - 33748854
Alignment:
Q  409 caaatgtgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 484  Q
    |||||| |||| |||||| || |||||||||||||||||||||||  |||| |||||||||||||| | |||||||    
T  33748779 caaatgagtgttccaatagtttttcacatcattagctgttctaccttgaagtcttgcagcaatcaacgtccatcta 33748854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 409 - 484
Target Start/End: Original strand, 33834899 - 33834974
Alignment:
Q  409 caaatgtgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 484  Q
    |||||| |||| |||||| || |||||||||||||||||||||||  |||| |||||||||||||| | |||||||    
T  33834899 caaatgagtgttccaatagtttttcacatcattagctgttctaccttgaagtcttgcagcaatcaacgtccatcta 33834974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 592 - 712
Target Start/End: Original strand, 33680120 - 33680240
Alignment:
Q  592 agtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccacctcaatctacagcttt 691  Q
    |||||||||| |||||| |||||||||| |||||| |  |  || ||||| || |||||    ||| |||||||||| | ||||||||||||||| ||||    
T  33680120 agtttgtgtagccttagaatcatatcaatttcatcatgggagaaactttctctattgattgcagggtttaaataattcacccacctcaatctacaacttt 33680219  T
Q  692 ttcggcacctattcaatcctg 712  Q
    | ||||| |||||||| ||||    
T  33680220 tccggcatctattcaaacctg 33680240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 274 - 316
Target Start/End: Original strand, 33748641 - 33748683
Alignment:
Q  274 attatgtttcccattcaacgaaggtggatgagttgagaaagtt 316  Q
    ||||||||||||||||||| |||||| ||||||||| ||||||    
T  33748641 attatgtttcccattcaaccaaggtgaatgagttgaaaaagtt 33748683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 274 - 316
Target Start/End: Original strand, 33834761 - 33834803
Alignment:
Q  274 attatgtttcccattcaacgaaggtggatgagttgagaaagtt 316  Q
    ||||||||||||||||||| |||||| ||||||||| ||||||    
T  33834761 attatgtttcccattcaaccaaggtgaatgagttgaaaaagtt 33834803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 344
Target Start/End: Original strand, 148395 - 148719
Alignment:
Q  8 tcatccacatttggaaactcagaaataaagttctcctcttgtaataaagaacctgacccaattttctcactacttttatgctcctccaagttcaataaac 107  Q
    |||||||||||||||||||||   ||||||||||||||||||||| |||| ||||| ||||||||||||| || ||          ||||||||||||||    
T  148395 tcatccacatttggaaactca---ataaagttctcctcttgtaatgaagagcctgaaccaattttctcaccacattg---------caagttcaataaac 148482  T
Q  108 cgtcccaccacattgcacatggtattggagcattaccaagacttggttgtgaaacaccaacatattctctaccaatttggtttgaatccgtaatctcttt 207  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||   ||||||||||||||||||| | |||||||||||||    
T  148483 cgtcccaccacattgcacacggtattggagcattaccaagacttggttctgaaacaccaacaatatctctaccaatttggtttggaaccgtaatctcttt 148582  T
Q  208 attatcacgattaggcgagacttcaccgtgttgagttgaaaccaccacaattggtgtcacattaatattatgtttcccattcaacgaaggtggatgagtt 307  Q
    |||||||||||| ||||||||||||| ||||||||||||||   |||||||||||||| | ||||||||||||||||||||||||||||||| |||||||    
T  148583 attatcacgatttggcgagacttcacagtgttgagttgaaattgccacaattggtgtcgcgttaatattatgtttcccattcaacgaaggtgaatgagtt 148682  T
Q  308 gagaaagttcgaggtttaggtttaataatttcatgaa 344  Q
    |||||||||||||||| |||| |||||||||||||||    
T  148683 gagaaagttcgaggttgaggtctaataatttcatgaa 148719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 576 - 749
Target Start/End: Original strand, 149000 - 149173
Alignment:
Q  576 ttacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccac 675  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  149000 ttacctattccctagaagtttgtgtaaccttaggatcatatcgacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccac 149099  T
Q  676 ctcaatctacagctttttcggcacctattcaatcctgtcatgtgtaacatataatttaagtagttatgcatggt 749  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  149100 ctcaatctacagcttttgcggcacctattcaattctgtcatgtgtaacatataatttaagtaattatgcatggt 149173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 413 - 485
Target Start/End: Original strand, 148788 - 148860
Alignment:
Q  413 tgtgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcaatgaccatctaa 485  Q
    |||||||||||||| ||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  148788 tgtgtgtgccaatagttctttacatcattagctgttcttcccggaagccttccagcaatcaatgaccatctaa 148860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 3e-41; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 551 - 713
Target Start/End: Complemental strand, 5470290 - 5470128
Alignment:
Q  551 tgaatattaacttgtccttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgat 650  Q
    ||||| |||| ||| ||| ||||| ||||||||| ||||  ||||||||||||||||| |||||||||||||||||||||| ||||||||  || |||||    
T  5470290 tgaattttaatttggcctcggaagcttacctatttcctaagagtttgtgtaaccttaggatcatatcaacttcatcctcagaaaagctttttctattgat 5470191  T
Q  651 gttggggcttaaataatttaaccacctcaatctacagctttttcggcacctattcaatcctgt 713  Q
    ||||||  |||||||||||| ||||||||||||||| |||||||| || ||||||||||||||    
T  5470190 gttgggctttaaataatttatccacctcaatctacaactttttcgacatctattcaatcctgt 5470128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 413 - 485
Target Start/End: Complemental strand, 5471265 - 5471193
Alignment:
Q  413 tgtgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcaatgaccatctaa 485  Q
    ||||||| |||||| || ||||||  ||||||||||||||||||||||||| |||||||||||||||||||||    
T  5471265 tgtgtgttccaatagtttttcacactattagctgttctacccggaagccttccagcaatcaatgaccatctaa 5471193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 572 - 713
Target Start/End: Original strand, 21306037 - 21306178
Alignment:
Q  572 aagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaa 671  Q
    ||||||||||||| ||||| ||||||||||||||||| |||| |||  |||||||||||| ||| ||| | || ||||||||||||||||| ||||||||    
T  21306037 aagattacctatttcctagtagtttgtgtaaccttaggatcaaatcttcttcatcctcagaaaatcttcctctgttgatgttggggcttaagtaatttaa 21306136  T
Q  672 ccacctcaatctacagctttttcggcacctattcaatcctgt 713  Q
    ||||||||||||||| ||||||| ||| ||||||||||||||    
T  21306137 ccacctcaatctacaactttttctgcatctattcaatcctgt 21306178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 409 - 484
Target Start/End: Original strand, 21305875 - 21305950
Alignment:
Q  409 caaatgtgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 484  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  21305875 caaatttgtgtgccaatagttcttcacatcattagctgttctacccggaagccttccagcaatcaatgaccatcta 21305950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 6 - 193
Target Start/End: Original strand, 21305517 - 21305701
Alignment:
Q  6 catcatccacatttggaaactcagaaataaagttctcctcttgtaataaagaacctgacccaattttctcactacttttatgctcctccaagttcaataa 105  Q
    ||||||| ||||||||||||||    || |||||||||||||||||| |||| | ||||||||||||||||||   |  ||| ||  |||||||| | ||    
T  21305517 catcatcaacatttggaaactcc---attaagttctcctcttgtaatgaagagcatgacccaattttctcactgtctacatgttctcccaagttccacaa 21305613  T
Q  106 accgtcccaccacattgcacatggtattggagcattaccaagacttggttgtgaaacaccaacatattctctaccaatttggtttgaa 193  Q
    || ||| ||||||||| ||||||||||||| |||||||| |||  ||||| ||||  |  | || | |||||||||||||| ||||||    
T  21305614 actgtcacaccacatttcacatggtattggggcattacctagatctggttttgaagtagaagcacactctctaccaatttgatttgaa 21305701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 566 - 715
Target Start/End: Complemental strand, 22020 - 21871
Alignment:
Q  566 ccttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaata 665  Q
    |||| |||| ||||||||| |||||||| |||||||||||||| |||| |||||||||||||| || |||  | ||||| ||||||| |||  |||||||    
T  22020 cctttgaagcttacctattgcctagaaggttgtgtaaccttagaatcaaatcaacttcatccttagaaaaattctccctgttgatgtagggatttaaata 21921  T
Q  666 atttaaccacctcaatctacagctttttcggcacctattcaatcctgtca 715  Q
    ||||| ||||||||||||||| |||||||| || ||||||||||||||||    
T  21920 atttacccacctcaatctacaactttttcgacatctattcaatcctgtca 21871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 410 - 483
Target Start/End: Complemental strand, 22228 - 22155
Alignment:
Q  410 aaatgtgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcaatgaccatct 483  Q
    |||||||| | |||||| || ||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  22228 aaatgtgtattccaatagtttttcacatcattagctgttctacctggaagccttccagcaatcaatgaccatct 22155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 592 - 715
Target Start/End: Complemental strand, 90191 - 90068
Alignment:
Q  592 agtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaataatttaaccacctcaatctacagcttt 691  Q
    ||||| ||||||||||| |||||||||||||||||||||| ||| |||||  | |||||| | ||| ||||||| || |||||||| |||||||| ||||    
T  90191 agtttttgtaaccttaggatcatatcaacttcatcctcagaaaatctttctttgttgatggttgggtttaaatagttaaaccaccttaatctacaacttt 90092  T
Q  692 ttcggcacctattcaatcctgtca 715  Q
    |||| |||||||| ||||||||||    
T  90091 ttcgacacctatttaatcctgtca 90068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 409 - 484
Target Start/End: Complemental strand, 114282 - 114207
Alignment:
Q  409 caaatgtgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 484  Q
    |||||||||||||||||| || || |||||||||||||||||| ||||||||||| | ||||||||||||||||||    
T  114282 caaatgtgtgtgccaatagtttttgacatcattagctgttctagccggaagccttcccgcaatcaatgaccatcta 114207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 58; Significance: 5e-24; HSPs: 2)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 566 - 715
Target Start/End: Complemental strand, 24435 - 24286
Alignment:
Q  566 ccttggaagattacctattccctagaagtttgtgtaaccttagcatcatatcaacttcatcctcagcaaagctttcccttttgatgttggggcttaaata 665  Q
    ||||||| | ||||||||||||||| || |||||||||||||  || | |||| ||||||||| || ||||   ||||| |||||||  ||| |||||||    
T  24435 ccttggacgcttacctattccctaggaggttgtgtaaccttaaaattaaatcagcttcatccttagaaaagtcctccctgttgatgtaagggtttaaata 24336  T
Q  666 atttaaccacctcaatctacagctttttcggcacctattcaatcctgtca 715  Q
    ||||| ||| || |||||||| |||||||| |||||||||||||||||||    
T  24335 atttacccatcttaatctacaactttttcgacacctattcaatcctgtca 24286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 409 - 484
Target Start/End: Complemental strand, 25293 - 25218
Alignment:
Q  409 caaatgtgtgtgccaataattcttcacatcattagctgttctacccggaagccttgcagcaatcaatgaccatcta 484  Q
    |||||| |||| |||||| || |||||||||||||||| ||||||| |||| |||||||||||||||| |||||||    
T  25293 caaatgggtgttccaatagtttttcacatcattagctgatctaccctgaagtcttgcagcaatcaatgtccatcta 25218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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