View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4346-Insertion-11 (Length: 245)
Name: NF4346-Insertion-11
Description: NF4346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4346-Insertion-11 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 7 - 186
Target Start/End: Original strand, 35278846 - 35279024
Alignment:
| Q |
7 |
aagtagttcaactaatttgagctaagagatttgaacttgatgatcttgaattcaaaaccgatgaaggagtataatattaatctaacaactaactattaac |
106 |
Q |
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| T |
35278846 |
aagtagttcaactaatttgagctaagagatttgaagttgatgatcttgaattcaaaaccgatgaaggagtataatattaatctaacaattaactattaac |
35278945 |
T |
|
| Q |
107 |
atttatcattnnnnnnnnggaaataatatataatggaagtctcaaattaatatttgatatgtatggagaccttgtcttta |
186 |
Q |
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| T |
35278946 |
atttatcatt-aaaaaaaggaaataatatataatggaagtctcaaattaatatttgatatgtatggagaccttgtcttta |
35279024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 116
Target Start/End: Original strand, 39389306 - 39389340
Alignment:
| Q |
82 |
attaatctaacaactaactattaacatttatcatt |
116 |
Q |
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| T |
39389306 |
attaatctaacaactaactattaacatttatcatt |
39389340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 82 - 116
Target Start/End: Original strand, 39389495 - 39389529
Alignment:
| Q |
82 |
attaatctaacaactaactattaacatttatcatt |
116 |
Q |
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| T |
39389495 |
attaatctaacaactaactattaacatttatcatt |
39389529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 35279047 - 35279083
Alignment:
| Q |
209 |
taacacacatgatcatgtccattgtgcataggcttga |
245 |
Q |
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| T |
35279047 |
taacacacatgatcatgtccattgtacataggcttga |
35279083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 116
Target Start/End: Original strand, 32775743 - 32775785
Alignment:
| Q |
74 |
agtataatattaatctaacaactaactattaacatttatcatt |
116 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||||| ||||| |
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| T |
32775743 |
agtacaatattaatctaacaactaactaataacatttgtcatt |
32775785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Complemental strand, 48308127 - 48308090
Alignment:
| Q |
79 |
aatattaatctaacaactaactattaacatttatcatt |
116 |
Q |
| |
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||||||||||||||||||||||| |||||||| ||||| |
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| T |
48308127 |
aatattaatctaacaactaactactaacatttgtcatt |
48308090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 110
Target Start/End: Original strand, 20601860 - 20601902
Alignment:
| Q |
67 |
atgaaggagtataatattaatctaacaactaactattaacattt |
110 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
20601860 |
atgaaggagta-aatattaatttaacaactaactattaacattt |
20601902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 38493000 - 38492951
Alignment:
| Q |
66 |
gatgaaggagtataatattaatctaacaactaactattaacatttatcatt |
116 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||| || ||||||||||||| |
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| T |
38493000 |
gatgaaggag-ataaaattaatctaacaactaaccatcaacatttatcatt |
38492951 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 116
Target Start/End: Original strand, 26459136 - 26459172
Alignment:
| Q |
80 |
atattaatctaacaactaactattaacatttatcatt |
116 |
Q |
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|||||||| ||||||||||||||||| |||||||||| |
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|
| T |
26459136 |
atattaatttaacaactaactattaatatttatcatt |
26459172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 110
Target Start/End: Original strand, 10799261 - 10799304
Alignment:
| Q |
66 |
gatgaaggagtataatattaatctaacaactaactattaacattt |
110 |
Q |
| |
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|||||||||||| |||||||||||||||||||| || |||||||| |
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| T |
10799261 |
gatgaaggagta-aatattaatctaacaactaattactaacattt |
10799304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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