View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4346-Insertion-12 (Length: 175)

Name: NF4346-Insertion-12
Description: NF4346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4346-Insertion-12
NF4346-Insertion-12
[»] chr2 (31 HSPs)
chr2 (8-175)||(41498013-41498181)
chr2 (8-175)||(43492601-43492769)
chr2 (8-174)||(19470517-19470684)
chr2 (8-174)||(2918260-2918427)
chr2 (13-174)||(3936317-3936479)
chr2 (13-174)||(43983758-43983920)
chr2 (8-110)||(35492673-35492775)
chr2 (13-174)||(17425822-17425984)
chr2 (13-174)||(22002858-22003020)
chr2 (13-174)||(28476538-28476700)
chr2 (8-110)||(16582951-16583053)
chr2 (8-110)||(23408862-23408964)
chr2 (8-110)||(40676379-40676481)
chr2 (8-109)||(33404897-33404998)
chr2 (13-174)||(39798881-39799043)
chr2 (12-175)||(3942532-3942696)
chr2 (18-110)||(6977988-6978080)
chr2 (18-110)||(15890933-15891025)
chr2 (18-111)||(37311601-37311694)
chr2 (38-111)||(17537869-17537942)
chr2 (21-110)||(34520677-34520766)
chr2 (20-110)||(5421296-5421386)
chr2 (54-110)||(23786748-23786804)
chr2 (19-110)||(16413235-16413325)
chr2 (18-110)||(28272590-28272682)
chr2 (38-101)||(24107739-24107802)
chr2 (127-175)||(23786677-23786725)
chr2 (127-175)||(40676309-40676357)
chr2 (128-175)||(23408984-23409031)
chr2 (127-175)||(16583073-16583121)
chr2 (127-175)||(35492797-35492845)
[»] chr3 (48 HSPs)
chr3 (7-175)||(46345499-46345669)
chr3 (8-175)||(2429623-2429790)
chr3 (8-175)||(34646116-34646284)
chr3 (12-175)||(2267498-2267662)
chr3 (8-111)||(41579064-41579167)
chr3 (8-175)||(45099364-45099532)
chr3 (8-175)||(43571021-43571190)
chr3 (13-174)||(49139068-49139230)
chr3 (12-175)||(49611297-49611458)
chr3 (13-174)||(54391485-54391647)
chr3 (12-175)||(43478170-43478334)
chr3 (12-175)||(51694449-51694613)
chr3 (8-110)||(4003233-4003335)
chr3 (8-106)||(55205906-55206004)
chr3 (13-174)||(2645890-2646052)
chr3 (13-174)||(34050770-34050932)
chr3 (13-174)||(46406048-46406210)
chr3 (8-109)||(55268041-55268142)
chr3 (22-175)||(7247212-7247367)
chr3 (16-175)||(13894800-13894960)
chr3 (12-175)||(34692191-34692361)
chr3 (8-175)||(36136053-36136220)
chr3 (12-171)||(49217646-49217806)
chr3 (8-175)||(52568335-52568502)
chr3 (13-110)||(3494103-3494200)
chr3 (20-110)||(3497797-3497887)
chr3 (38-111)||(20374937-20375010)
chr3 (18-110)||(11377942-11378034)
chr3 (18-110)||(14632631-14632723)
chr3 (18-110)||(34471022-34471114)
chr3 (18-110)||(49274583-49274675)
chr3 (18-110)||(51012247-51012339)
chr3 (25-110)||(27096651-27096736)
chr3 (18-111)||(44928624-44928717)
chr3 (18-106)||(50458215-50458303)
chr3 (44-101)||(27188263-27188320)
chr3 (18-103)||(50341410-50341495)
chr3 (56-110)||(10052318-10052372)
chr3 (18-110)||(51016452-51016544)
chr3 (129-175)||(41579192-41579238)
chr3 (54-110)||(18441574-18441630)
chr3 (54-110)||(19486648-19486704)
chr3 (127-175)||(24701289-24701337)
chr3 (54-110)||(46413249-46413305)
chr3 (18-85)||(30193699-30193766)
chr3 (127-175)||(55205837-55205885)
chr3 (127-174)||(3494038-3494085)
chr3 (127-174)||(3497732-3497779)
[»] chr4 (41 HSPs)
chr4 (8-175)||(34152180-34152347)
chr4 (8-175)||(44559221-44559388)
chr4 (7-110)||(956413-956516)
chr4 (8-175)||(56140039-56140208)
chr4 (12-175)||(34528713-34528877)
chr4 (8-175)||(49422651-49422819)
chr4 (13-174)||(6176331-6176493)
chr4 (13-174)||(21016193-21016355)
chr4 (12-175)||(1043873-1044037)
chr4 (12-175)||(39589909-39590073)
chr4 (13-174)||(49095774-49095937)
chr4 (13-174)||(41793818-41793980)
chr4 (11-175)||(37867599-37867764)
chr4 (16-175)||(49572254-49572414)
chr4 (8-110)||(4784302-4784404)
chr4 (13-110)||(40352857-40352954)
chr4 (8-110)||(6281484-6281586)
chr4 (12-110)||(42887429-42887527)
chr4 (13-110)||(55797772-55797869)
chr4 (19-111)||(21410937-21411029)
chr4 (8-175)||(9490611-9490781)
chr4 (8-110)||(51427160-51427263)
chr4 (19-111)||(21412417-21412509)
chr4 (18-110)||(25145688-25145780)
chr4 (21-110)||(36775444-36775533)
chr4 (18-110)||(9718413-9718504)
chr4 (18-110)||(21170635-21170727)
chr4 (18-110)||(49790891-49790983)
chr4 (18-110)||(51026750-51026842)
chr4 (24-106)||(24076287-24076369)
chr4 (18-100)||(49816385-49816467)
chr4 (26-110)||(17292831-17292915)
chr4 (18-110)||(45940697-45940789)
chr4 (18-85)||(43888477-43888544)
chr4 (18-111)||(4910594-4910687)
chr4 (18-110)||(2774176-2774267)
chr4 (127-175)||(37959183-37959231)
chr4 (127-175)||(42887551-42887599)
chr4 (127-174)||(40352790-40352837)
chr4 (127-175)||(956346-956394)
chr4 (127-175)||(4784229-4784277)
[»] scaffold0618 (1 HSPs)
scaffold0618 (7-174)||(4452-4623)
[»] chr5 (31 HSPs)
chr5 (8-175)||(18309405-18309574)
chr5 (13-175)||(3602492-3602654)
chr5 (8-175)||(8539002-8539166)
chr5 (8-110)||(20199485-20199587)
chr5 (13-174)||(11028478-11028640)
chr5 (7-110)||(34682889-34682992)
chr5 (8-110)||(11347826-11347928)
chr5 (8-110)||(25499226-25499328)
chr5 (13-174)||(19035692-19035854)
chr5 (13-174)||(8575159-8575320)
chr5 (13-110)||(6312-6409)
chr5 (20-110)||(35927042-35927132)
chr5 (17-174)||(27660394-27660552)
chr5 (13-174)||(38855185-38855347)
chr5 (14-109)||(1399264-1399359)
chr5 (8-169)||(35566416-35566579)
chr5 (18-110)||(1972533-1972625)
chr5 (18-110)||(7484454-7484546)
chr5 (13-110)||(30710630-30710727)
chr5 (18-110)||(6792408-6792500)
chr5 (18-106)||(7400867-7400955)
chr5 (38-109)||(4723053-4723124)
chr5 (18-113)||(36349262-36349356)
chr5 (62-175)||(41202296-41202410)
chr5 (18-110)||(1695964-1696056)
chr5 (19-111)||(10978447-10978539)
chr5 (127-175)||(541474-541522)
chr5 (127-175)||(34682813-34682861)
chr5 (18-86)||(31239161-31239229)
chr5 (128-174)||(6247-6293)
chr5 (127-175)||(20199612-20199660)
[»] chr7 (29 HSPs)
chr7 (8-175)||(41623227-41623395)
chr7 (8-175)||(28113298-28113469)
chr7 (8-175)||(17840345-17840513)
chr7 (8-175)||(48271797-48271965)
chr7 (12-175)||(34142001-34142165)
chr7 (13-174)||(9366133-9366295)
chr7 (13-174)||(20565790-20565952)
chr7 (8-175)||(42683549-42683720)
chr7 (7-110)||(21186255-21186358)
chr7 (8-110)||(36392782-36392884)
chr7 (13-174)||(42504271-42504433)
chr7 (8-110)||(46861156-46861258)
chr7 (15-175)||(45362188-45362349)
chr7 (8-175)||(28978128-28978296)
chr7 (12-175)||(48194115-48194279)
chr7 (8-175)||(34157826-34157993)
chr7 (18-110)||(4230629-4230721)
chr7 (15-175)||(40589890-40590051)
chr7 (19-174)||(1641578-1641734)
chr7 (8-175)||(10225216-10225387)
chr7 (18-109)||(22292002-22292093)
chr7 (18-111)||(3380019-3380112)
chr7 (18-110)||(15900367-15900459)
chr7 (18-106)||(43350357-43350445)
chr7 (18-85)||(20877010-20877077)
chr7 (18-111)||(42736147-42736239)
chr7 (56-110)||(17184393-17184447)
chr7 (127-175)||(36392708-36392756)
chr7 (24-111)||(16885958-16886044)
[»] chr1 (46 HSPs)
chr1 (8-171)||(35525094-35525257)
chr1 (8-175)||(49428485-49428653)
chr1 (12-174)||(29761075-29761236)
chr1 (8-110)||(46142413-46142515)
chr1 (12-175)||(51270953-51271117)
chr1 (8-106)||(18974457-18974555)
chr1 (13-175)||(36911031-36911196)
chr1 (8-111)||(13974072-13974175)
chr1 (8-175)||(41803372-41803540)
chr1 (12-175)||(44336810-44336974)
chr1 (8-110)||(26494604-26494706)
chr1 (8-175)||(29437080-29437246)
chr1 (8-110)||(42570749-42570851)
chr1 (13-174)||(13634312-13634474)
chr1 (8-175)||(6436866-6437038)
chr1 (8-175)||(49397792-49397960)
chr1 (26-110)||(14172718-14172802)
chr1 (27-110)||(26634166-26634249)
chr1 (8-175)||(48227657-48227825)
chr1 (8-175)||(49925341-49925509)
chr1 (8-110)||(24363025-24363127)
chr1 (13-175)||(27485613-27485777)
chr1 (22-111)||(23343677-23343766)
chr1 (18-110)||(35585864-35585956)
chr1 (20-110)||(15355746-15355836)
chr1 (18-111)||(16531151-16531244)
chr1 (18-106)||(37779302-37779390)
chr1 (18-110)||(38044166-38044258)
chr1 (18-110)||(39856205-39856297)
chr1 (18-106)||(17685295-17685383)
chr1 (18-110)||(24269330-24269421)
chr1 (18-110)||(35186157-35186249)
chr1 (18-110)||(49260641-49260733)
chr1 (18-111)||(12790234-12790324)
chr1 (26-99)||(14771744-14771817)
chr1 (127-175)||(18974592-18974640)
chr1 (21-83)||(40532366-40532428)
chr1 (8-77)||(13284606-13284675)
chr1 (127-175)||(42570680-42570728)
chr1 (127-174)||(13284688-13284735)
chr1 (128-175)||(26634093-26634140)
chr1 (127-174)||(24362959-24363006)
chr1 (129-175)||(46142341-46142387)
chr1 (18-71)||(31451454-31451507)
chr1 (127-175)||(14172649-14172697)
chr1 (127-175)||(26494729-26494777)
[»] chr8 (26 HSPs)
chr8 (8-175)||(41016865-41017033)
chr8 (12-175)||(41276215-41276379)
chr8 (21-175)||(18439194-18439349)
chr8 (8-110)||(28167939-28168041)
chr8 (8-175)||(41855893-41856061)
chr8 (12-175)||(24862486-24862650)
chr8 (12-175)||(22550206-22550368)
chr8 (20-110)||(42604599-42604689)
chr8 (13-110)||(484335-484432)
chr8 (13-174)||(15031337-15031499)
chr8 (13-174)||(45065818-45065980)
chr8 (16-110)||(40703505-40703599)
chr8 (18-110)||(26487612-26487704)
chr8 (12-106)||(44051572-44051666)
chr8 (18-108)||(42167900-42167990)
chr8 (18-110)||(38032866-38032958)
chr8 (67-175)||(38872351-38872461)
chr8 (18-94)||(19241635-19241711)
chr8 (18-94)||(19314819-19314895)
chr8 (127-175)||(28168069-28168117)
chr8 (28-110)||(10205589-10205671)
chr8 (129-175)||(44051693-44051739)
chr8 (45-111)||(31171049-31171115)
chr8 (129-174)||(484270-484315)
chr8 (24-109)||(24629009-24629094)
chr8 (127-175)||(40703619-40703667)
[»] chr6 (28 HSPs)
chr6 (8-175)||(13403956-13404124)
chr6 (8-175)||(32026518-32026686)
chr6 (8-175)||(32036577-32036745)
chr6 (13-174)||(6206517-6206679)
chr6 (13-174)||(11693484-11693646)
chr6 (13-174)||(27641207-27641369)
chr6 (8-109)||(34802145-34802246)
chr6 (8-108)||(13616862-13616962)
chr6 (13-175)||(29067625-29067788)
chr6 (13-175)||(29109214-29109377)
chr6 (13-110)||(32691670-32691767)
chr6 (8-110)||(14123853-14123955)
chr6 (16-78)||(35020248-35020310)
chr6 (18-111)||(32133628-32133721)
chr6 (18-110)||(12397952-12398043)
chr6 (18-110)||(20241312-20241404)
chr6 (18-110)||(22135296-22135388)
chr6 (18-110)||(22142649-22142741)
chr6 (22-106)||(33201441-33201525)
chr6 (18-81)||(17464487-17464550)
chr6 (22-111)||(14485936-14486024)
chr6 (38-106)||(30763946-30764014)
chr6 (18-111)||(21863876-21863969)
chr6 (127-175)||(13616788-13616836)
chr6 (127-175)||(35020142-35020190)
chr6 (29-81)||(11181811-11181863)
chr6 (147-174)||(32133564-32133591)
chr6 (127-174)||(32691604-32691651)
[»] scaffold0176 (1 HSPs)
scaffold0176 (12-175)||(2926-3090)
[»] scaffold0494 (1 HSPs)
scaffold0494 (13-110)||(5803-5900)
[»] scaffold0859 (1 HSPs)
scaffold0859 (18-174)||(1492-1649)
[»] scaffold0589 (1 HSPs)
scaffold0589 (18-100)||(5456-5538)
[»] scaffold0500 (1 HSPs)
scaffold0500 (18-110)||(1574-1666)
[»] scaffold0258 (1 HSPs)
scaffold0258 (20-99)||(9648-9727)
[»] scaffold0192 (1 HSPs)
scaffold0192 (128-175)||(16978-17025)


Alignment Details
Target: chr2 (Bit Score: 112; Significance: 7e-57; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 7e-57
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 41498181 - 41498013
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41498181 gttggccgctacagtccctggggcaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 41498082  T
Q  108 ttcagaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| || |       ||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  41498081 ttcgaacctttcattttttcggaaccatcacaaacaattatgtgccatgtcataggcgatttttctttg 41498013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 43492601 - 43492769
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||| ||| ||||||| |||||||||||| ||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  43492601 gttgtccgttacagtcactggggcaccttgttttggttgaggaccaaaatagcatgtcctcccactcctcgtcaacctggactgattgtacaccggcacc 43492700  T
Q  108 ttcagaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| ||         ||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  43492701 ttcgaacccttctttttttcggaaccatcacaaacaattatgtgccatgtcataggcgatttttctttg 43492769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 19470684 - 19470517
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  19470684 gttgcccgctacagtccctagggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccgagacc 19470585  T
Q  108 ttcagaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    |||  ||| ||         ||||||||| |||||||||| ||| |||||||||| ||||||||||||    
T  19470584 ttcgaacccttctttttttcggaaccatcacaaacaattatgtgtcatgtcatagacgatttttcttt 19470517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 2918427 - 2918260
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||| ||||||||| ||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  2918427 gttgcccactacagtccatggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctcaacctcgactgattgtacaccggcacc 2918328  T
Q  108 ttcagaccatta-nnnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    |||  ||| |||        | ||||||| |||||||||  ||||||||||||||| |||||||||||    
T  2918327 ttcgaacccttatttttttcgaaaccatcacaaacaattctgtgccatgtcataggtgatttttcttt 2918260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 3936479 - 3936317
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||      
T  3936479 ccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcaccttcga 3936380  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||| ||         ||||||||||||||||||| | |||||||||||||| || ||||||||    
T  3936379 acccttctttttttcggaaccatcgcaaacaattccatgccatgtcataggtgacttttcttt 3936317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 43983758 - 43983920
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||      
T  43983758 ccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcaccttcga 43983857  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||| ||         ||||||||||||||||||| | |||||||||||||| || ||||||||    
T  43983858 acccttctttttttcggaaccatcgcaaacaattccatgccatgtcataggtgacttttcttt 43983920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 35492673 - 35492775
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || | ||||||||||||||||    
T  35492673 gttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgagtaattgtacaccggcacc 35492772  T
Q  108 ttc 110  Q
    |||    
T  35492773 ttc 35492775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 17425822 - 17425984
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||      
T  17425822 ccgctacagtccctgcggtaccttgttttggttgaggactgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcaccttcga 17425921  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||| ||         ||||||||||||||||||| | |||||||||||||| || ||||||||    
T  17425922 acccttctttttttcggaaccatcgcaaacaattccatgccatgtcataggtgacttttcttt 17425984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 22002858 - 22003020
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||      
T  22002858 ccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacactggcaccttcga 22002957  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||| ||         ||||||||||||||||||| | ||||| |||||||| |||||||||||    
T  22002958 acccttctttttttcggaaccatcgcaaacaatttcatgccacgtcataggtgatttttcttt 22003020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 28476538 - 28476700
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||      
T  28476538 ccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacactggcaccttcga 28476637  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||| ||         ||||||||||||||||||| | ||||| |||||||| |||||||||||    
T  28476638 acccttctttttttcggaaccatcgcaaacaattccatgccacgtcataggtgatttttcttt 28476700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 75; E-Value: 8e-35
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 16582951 - 16583053
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||| ||||||||||| ||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  16582951 gttgccctctacagtccctagggcaccttgtttttgttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcacc 16583050  T
Q  108 ttc 110  Q
    |||    
T  16583051 ttc 16583053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 75; E-Value: 8e-35
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 23408862 - 23408964
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||||| ||||||||| |||||  |||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  23408862 gttgcccgctacaatccctggggtaccttgatttggttgaggaccaaaatagcatgtcctcccgctcctcctcaaactcgactgattgtacaccggcacc 23408961  T
Q  108 ttc 110  Q
    |||    
T  23408962 ttc 23408964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 40676481 - 40676379
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||||| |||||||||| ||||||||||| ||||| || |||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40676481 gttgcctgctacagtccatggggcaccttgttttgattaaggacgaaaatagcatgtcctcccgctcctcctcaaccttgactgattgtacaccggcacc 40676382  T
Q  108 ttc 110  Q
    |||    
T  40676381 ttc 40676379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 70; E-Value: 8e-32
Query Start/End: Original strand, 8 - 109
Target Start/End: Original strand, 33404897 - 33404998
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||| | ||||||||||||||||||  ||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||| |||||    
T  33404897 gttgccctcgacagtccctggggcacctacttttggttgaggaccaaaatagcatgtcctaccgctcctcctcaacctcgactgattgtacaccagcacc 33404996  T
Q  108 tt 109  Q
    ||    
T  33404997 tt 33404998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 70; E-Value: 8e-32
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 39799043 - 39798881
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    |||||||||| |||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||| |||||||||      
T  39799043 ccgctacagttcctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaaccgcgagtgattgtacactggcaccttcga 39798944  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||||||          |||||||||||||||||| | ||||| |||||||| |||||||||||    
T  39798943 accattctttttttcagaaccatcgcaaacaattccatgccacgtcataggagatttttcttt 39798881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 3942532 - 3942696
Alignment:
Q  12 cccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    ||||||||||||| ||  ||||||| |||| |||||||||| ||||||||| ||||||||||||||||||||||  | |||||||||||||||||||||     
T  3942532 cccgctacagtccatgccgcaccttgttttagttgaggaccaaaatagcatatcctcccgctcctcctcaacctcaagtgattgtacaccggcaccttcg 3942631  T
Q  112 gaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
     ||| ||         | |||||||||||||||||  |||||| |||||||||||||||||||||    
T  3942632 aacccttctttttttcgaaaccatcgcaaacaattctgtgccacgtcataggcgatttttctttg 3942696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 6977988 - 6978080
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||| ||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| |||||| ||||||||    
T  6977988 acagtcccttgggcacctgcttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgaatgattatacaccagcaccttc 6978080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 15891025 - 15890933
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||||||||||  ||||||||||||||| |||||||||||||| |||||||||||||||||  | ||||||||||||  |||||||    
T  15891025 acagtccctggggcacctgcttttggttgaggaccaaaatagcatgtccttccgctcctcctcaacctaaaatgattgtacaccaacaccttc 15890933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 37311694 - 37311601
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    ||||||||||||||||||  |||||| |||||| | |||||||||||||||||||||||| ||||||| || ||||| |||||| |||||||||    
T  37311694 acagtccctggggcacctacttttggctgaggatcaaaatagcatgtcctcccgctcctcatcaacctcgaatgattatacaccagcaccttca 37311601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 50; E-Value: 7e-20
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 17537942 - 17537869
Alignment:
Q  38 ttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||| || ||||| |||||| |||||||||    
T  17537942 ttttggctgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgaatgattatacaccagcaccttca 17537869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 34520766 - 34520677
Alignment:
Q  21 gtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    |||||| ||||||||  |||||| ||| |||| |||||||||||||||||||||||||||||||| || ||||| ||||||  |||||||    
T  34520766 gtccctcgggcacctgcttttggctgaagaccaaaatagcatgtcctcccgctcctcctcaacctcgaatgattatacaccaacaccttc 34520677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 5421296 - 5421386
Alignment:
Q  20 agtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||||||||  |||||| |||||||| ||||||||||| || |||||||||||||||||  | ||||| | |||| ||||||||    
T  5421296 agtccctggggcacctgcttttggctgaggaccaaaatagcatgttctgccgctcctcctcaacctcaaatgattatgcaccagcaccttc 5421386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 23786804 - 23786748
Alignment:
Q  54 aaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||| |||||||||    
T  23786804 aaatagcatgtcatcccgctcctcctcaacctcgagtgattgtacactggcaccttc 23786748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.00000000000006
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 16413325 - 16413235
Alignment:
Q  19 cagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    |||||||||  ||||||  ||||||||||| ||| ||||| |||||| ||||||||||||||||||| || ||||||||||| | |||||||    
T  16413325 cagtccctgcagcacctgcttttggttgag-accaaaataacatgtcttcccgctcctcctcaacctcgaatgattgtacactgacaccttc 16413235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 28272682 - 28272590
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||| | ||||||||  |||| |||||||||| ||||| || ||||| || |||||||| | |||||| ||||||||||||| |||||||    
T  28272682 acagtccttagggcacctgcttttagttgaggaccaaaataacaagtccttccactcctccttagcctggaatgattgtacaccgacaccttc 28272590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 101
Target Start/End: Complemental strand, 24107802 - 24107739
Alignment:
Q  38 ttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacacc 101  Q
    |||||| |||||||| ||||||||| ||||| |||||||||||||||| || ||||| ||||||    
T  24107802 ttttggctgaggaccaaaatagcatttcctctcgctcctcctcaacctcgaatgattatacacc 24107739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 23786725 - 23786677
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||||||||||||||||||  |||||| | |||||||||||||||||||    
T  23786725 ggaaccatcgcaaacaattctgtgccacgccataggcgatttttctttg 23786677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 40676357 - 40676309
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    ||||||||| ||||||||| |||| |||||||||||| |||||||||||    
T  40676357 ggaaccatcacaaacaatttcgtgtcatgtcataggcaatttttctttg 40676309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 23408984 - 23409031
Alignment:
Q  128 gaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  23408984 gaaccatcacaaacaattctgtgtcatgtcataggcgatttttctttg 23409031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 16583073 - 16583121
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    ||||||||| |||||||||  |||||| ||||||| |||||||||||||    
T  16583073 ggaaccatcacaaacaattttgtgccacgtcatagacgatttttctttg 16583121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 35492797 - 35492845
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    ||||||||| |||||||||  |||||| ||||||| |||||||||||||    
T  35492797 ggaaccatcacaaacaattttgtgccacgtcatagacgatttttctttg 35492845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 6e-54; HSPs: 48)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 6e-54
Query Start/End: Original strand, 7 - 175
Target Start/End: Complemental strand, 46345669 - 46345499
Alignment:
Q  7 agttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcac 106  Q
    |||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  46345669 agttgcccgctacagtccatggggcaccttgtttttgttgaggaccgaaatagcatgtcctcccgctgctcctcaacctggactgattgtacaccggcac 46345570  T
Q  107 cttcagaccat--tannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||| ||||||  |        ||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  46345569 cttcggaccattcttttttttcggaaccatcacaaacaatttcgtgccatgtcataggcgatttttctttg 46345499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 91; E-Value: 2e-44
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 2429623 - 2429790
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||| |||||||| || ||||||||||||||||||    
T  2429623 gttgcccgctatagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcttcccgctcctgctcaacctcgagtgattgtacaccggcacc 2429722  T
Q  108 ttcagaccattannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| ||        ||||||||||||||||||| |||||||||||||| | ||||||||||||    
T  2429723 ttcgaacccttcttttttcggaaccatcgcaaacaattccgtgccatgtcatatgagatttttctttg 2429790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 34646284 - 34646116
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||||||    
T  34646284 gttgcccgctacagtccctagggcaccttcttttggttgaggaccaaaatagcatgtcctcccactcctcctcaacctcgattgattgtacaccggcacc 34646185  T
Q  108 ttcagaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| ||         ||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  34646184 ttcgaacccttctttttttcggaaccatcacaaacaattttgtgccatgtcataggcgatttttctttg 34646116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 2267662 - 2267498
Alignment:
Q  12 cccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    |||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||     
T  2267662 cccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccgacaccttcg 2267563  T
Q  112 gaccatta-nnnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
     ||| |||        |||||||||||||| |||| | ||||| |||||||||||||||||||||    
T  2267562 aacccttatttttttcggaaccatcgcaaataattccatgccacgtcataggcgatttttctttg 2267498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 41579064 - 41579167
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||| |||| |||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41579064 gttgcccgctatagtcactggggcaccttgttttggttgaggaccaaaatagcatgtcttcccgctcctcctcaacctggactgattgtacaccggcacc 41579163  T
Q  108 ttca 111  Q
    ||||    
T  41579164 ttca 41579167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 45099532 - 45099364
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||| ||||| ||||||||||||||| |||||||||| |||||||||||||||||||||    
T  45099532 gttgcccgctacagtccctggtgcaccttgttttggttgaggaccaaaataacatgtcctcccgctcatcctcaacctcgactgattgtacaccggcacc 45099433  T
Q  108 ttcagaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| ||         ||||||||| |||||||||| ||| ||||||||||| ||||||||||||    
T  45099432 ttcgaacccttctttttttcggaaccatcacaaacaattatgtgtcatgtcataggtgatttttctttg 45099364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 43571021 - 43571190
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||||||||||||||||||| ||||||||  |||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  43571021 gttgcccgctacagtccctgaggcaccttgatttggtcgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgactgattgtacatcggcacc 43571120  T
Q  108 ttcagaccat--tannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| |  |        ||||||||| |||||||||  ||||||||||||||||||||||||||||    
T  43571121 ttcgaacccttcttttttttcggaaccatcacaaacaattcagtgccatgtcataggcgatttttctttg 43571190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 49139230 - 49139068
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||      
T  49139230 ccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcaccttcga 49139131  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||| ||         ||||||||||||||||||| | |||||||||||||| || ||||||||    
T  49139130 acccttctttttttcggaaccatcgcaaacaattccatgccatgtcataggtgacttttcttt 49139068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 49611297 - 49611458
Alignment:
Q  12 cccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    |||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||| |||||      
T  49611297 cccgctacagtccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggtacctt-- 49611394  T
Q  112 gaccatta-nnnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
     ||| |||        ||||||||||||||||||| ||||||| ||||||| |||||||||||||    
T  49611395 -acccttatttttttcggaaccatcgcaaacaattccgtgccacgtcatagacgatttttctttg 49611458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 54391485 - 54391647
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||      
T  54391485 ccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcaccttcga 54391584  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||| ||         ||||||||||||||||||| | |||||||||||||| || ||||||||    
T  54391585 acccttctttttttcggaaccatcgcaaacaattccatgccatgtcataggtgacttttcttt 54391647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 80; E-Value: 8e-38
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 43478170 - 43478334
Alignment:
Q  12 cccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    |||||||||||||||| |||||| | ||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| | |||||||     
T  43478170 cccgctacagtccctgcggcaccctgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacacagacaccttcg 43478269  T
Q  112 gaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
     ||| ||         ||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  43478270 aacccttctttttttcggaaccatcgcaaacaatttcgtgccacgtcataggcgatttttctttg 43478334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 80; E-Value: 8e-38
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 51694613 - 51694449
Alignment:
Q  12 cccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    |||||||||||||||| | |||||| |||||||| |||| | |||||||||||||||||||||||||||||||| || |||||||||||||||||||||     
T  51694613 cccgctacagtccctgcgacaccttgttttggtttaggaacaaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcaccttcg 51694514  T
Q  112 gaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
     ||| ||         |||||||||||||||||||| |||||| |||||||||||||||||||||    
T  51694513 aacccttctttttttcggaaccatcgcaaacaattatgtgccacgtcataggcgatttttctttg 51694449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 4003335 - 4003233
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||    
T  4003335 gttgcccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtccttccgctcctcctcaacctcgagtgattgtacaccggcacc 4003236  T
Q  108 ttc 110  Q
    |||    
T  4003235 ttc 4003233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 8 - 106
Target Start/End: Complemental strand, 55206004 - 55205906
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcac 106  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||    
T  55206004 gttgcccactacagtccctggggcaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgaatgattgtacatcggcac 55205906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 2646052 - 2645890
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||      
T  2646052 ccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaaccttgagtgattgtacactggcaccttcga 2645953  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||| ||         ||||||||||||||||||| | ||||| |||||||| |||||||||||    
T  2645952 acccttctttttttcggaaccatcgcaaacaattccatgccacgtcataggtgatttttcttt 2645890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 34050770 - 34050932
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||| || ||||| ||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||      
T  34050770 ccgctacagtccctgtggtaccttgttttggttgaggaccgaaataacatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcaccttcga 34050869  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||| ||         ||||||||||||||||||| | |||||||||||||| || ||||||||    
T  34050870 acccttctttttttcggaaccatcgcaaacaattccatgccatgtcataggtgacttttcttt 34050932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 46406048 - 46406210
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||      
T  46406048 ccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacatcggcaccttcga 46406147  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||| ||         ||||||||||||||||||| | |||||||||||||| || ||||||||    
T  46406148 acccttctttttttcggaaccatcgcaaacaattccatgccatgtcataggtgacttttcttt 46406210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 55268142 - 55268041
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||| ||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  55268142 gttgcccactagagtccctggggcaccttgttttggttcaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcacc 55268043  T
Q  108 tt 109  Q
    ||    
T  55268042 tt 55268041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 22 - 175
Target Start/End: Original strand, 7247212 - 7247367
Alignment:
Q  22 tccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcagaccat--ta 119  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||  ||| |  |     
T  7247212 tccctggggcaccttgttttggttgaggaccaaaatagcatgtcctctcgctcctcctcaacctggactgattgtacaccgacaccttcgaacccttctt 7247311  T
Q  120 nnnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
           ||||||||| |||||||||  ||| ||||||||||||||||||||||||    
T  7247312 ttttttcggaaccatctcaaacaattttgtgtcatgtcataggcgatttttctttg 7247367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 13894960 - 13894800
Alignment:
Q  16 ctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcagacc 115  Q
    ||||| ||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||  |||    
T  13894960 ctacaatccctggggcaccttgtttttgttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgaatgattgtacaccggcaccttcgaacc 13894861  T
Q  116 att-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
     ||         ||||||||| ||||||||| ||||||| ||||||| |||||||||||||    
T  13894860 cttctttttttcggaaccatcacaaacaatttcgtgccacgtcatagacgatttttctttg 13894800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 34692361 - 34692191
Alignment:
Q  12 cccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    |||||||||||||| | |||||||| ||||||||||||||| || ||||||||||||||||||||||||||||| || |||||||||||||||||||||     
T  34692361 cccgctacagtccccgcggcaccttgttttggttgaggaccaaagtagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcaccttcg 34692262  T
Q  112 gaccat-------tannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
     ||| |       |        ||||||||||||||||||| |||||||||||||||||||||||||||||    
T  34692261 aaccttttttttcttccttttcggaaccatcgcaaacaattccgtgccatgtcataggcgatttttctttg 34692191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 36136053 - 36136220
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||||||||||| ||||||  || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  36136053 gttgcccgctac-gtcccttcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcacc 36136151  T
Q  108 ttcagaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| ||         |||| |||||||||||||| ||||||| |||||||| ||||||||||||    
T  36136152 ttcgaacccttctttttttcggaatcatcgcaaacaattccgtgccacgtcataggtgatttttctttg 36136220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 49217806 - 49217646
Alignment:
Q  12 cccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    |||||||||||||||| |||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||| || |||||||||||| ||||||||     
T  49217806 cccgctacagtccctgcggcaccttgttttggttgaggaccaaaatagcatgtcttcccgctcctcctcaacctcgagtgattgtacacccgcaccttcg 49217707  T
Q  112 gac-cattannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttc 171  Q
     || | |         ||||||||||||||||||| | |||||||||||||||||||||||    
T  49217706 aactcttctttttttcggaaccatcgcaaacaattccatgccatgtcataggcgatttttc 49217646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 75; E-Value: 8e-35
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 52568502 - 52568335
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||| ||||||||||||||||||||| |||||||||| || | ||||||||||| |||||||||||||||||||| || ||||||||||||||||||    
T  52568502 gttgcccactacagtccctggggcaccttgttttggttgatgatcaaaatagcatgtgctcccgctcctcctcaacctcgagtgattgtacaccggcacc 52568403  T
Q  108 ttcagaccattannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| ||         |||| ||| ||||||||| ||||||| ||||||| |||||||||||||    
T  52568402 ttcgaacccttcttttttctgaactatcacaaacaatttcgtgccacgtcatagacgatttttctttg 52568335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 3494200 - 3494103
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    |||||| |||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| |||||  | |||||||| ||||||||||||    
T  3494200 ccgctatagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctgaacctccagtgattgtaaaccggcaccttc 3494103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 3497887 - 3497797
Alignment:
Q  20 agtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    |||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||| |||||  | |||||||| ||||||||||||    
T  3497887 agtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctgaacctccagtgattgtaaaccggcaccttc 3497797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 38 - 111
Target Start/End: Complemental strand, 20375010 - 20374937
Alignment:
Q  38 ttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    |||||||||| |||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||    
T  20375010 ttttggttgatgaccaaaatagcatgtcctcccgctcctcctcaacttggaatgattgtacaccggcaccttca 20374937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 11378034 - 11377942
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||| ||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||| || ||||| |||||| ||||||||    
T  11378034 acagtccctagggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgaatgattatacaccagcaccttc 11377942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 14632631 - 14632723
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||| ||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||| || ||||| |||||| ||||||||    
T  14632631 acagtccctagggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgaatgattatacaccagcaccttc 14632723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 34471114 - 34471022
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||| ||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||| || ||||| |||||| ||||||||    
T  34471114 acagtccctagggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgaatgattatacaccagcaccttc 34471022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 49274583 - 49274675
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    |||||||||||| |||||  |||||| |||||||| |||||||||||||||||||||||||||||||| || ||||| |||||| ||||||||    
T  49274583 acagtccctgggacacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgaatgattatacaccagcaccttc 49274675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 57; E-Value: 4e-24
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 51012339 - 51012247
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||| ||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||| || ||||| |||||| ||||||||    
T  51012339 acagttcctggggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgaatgattatacaccagcaccttc 51012247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 25 - 110
Target Start/End: Complemental strand, 27096736 - 27096651
Alignment:
Q  25 ctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    |||||||||||  |||||||||||  || |||||||||||||||||||||||||||||||| || |||||||||||||| ||||||    
T  27096736 ctggggcacctgcttttggttgagagccaaaatagcatgtcctcccgctcctcctcaacctagaatgattgtacaccggtaccttc 27096651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 44928624 - 44928717
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    ||||||||||||| ||||  |||||| |||||||| |||||||||||||||||||||||||||||||| || ||||| |||||  |||||||||    
T  44928624 acagtccctggggaacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgaatgattatacactagcaccttca 44928717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 50458303 - 50458215
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcac 106  Q
    ||||||||||||||||||  |||||| |||||||| ||||||||||||||||||||| |||||||||| || ||||| |||||| ||||    
T  50458303 acagtccctggggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcttcctcaacctcgaatgattatacaccagcac 50458215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 101
Target Start/End: Original strand, 27188263 - 27188320
Alignment:
Q  44 ttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacacc 101  Q
    ||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||    
T  27188263 ttgaggagcaaaatagcatgtcctcccgctcctcctcaacctcgactgattgtacacc 27188320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 50341495 - 50341410
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccgg 103  Q
    ||||||||| ||||||||  |||||||| ||||  |||||| |||||||| ||||||||||||| |||||| || |||||||||||    
T  50341495 acagtccctagggcacctgcttttggtttaggatagaaataacatgtccttccgctcctcctcagcctggaatggttgtacaccgg 50341410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Complemental strand, 10052372 - 10052318
Alignment:
Q  56 atagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    |||||||||||||||||||||||||||||| || ||||| |||||| ||||||||    
T  10052372 atagcatgtcctcccgctcctcctcaacctcgaatgattatacaccagcaccttc 10052318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 51016452 - 51016544
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||| ||||||||||  |||||| |||||||| |||||||||||||| | | | ||||||||||| || ||||| ||||||  |||||||    
T  51016452 acagtccatggggcacctgcttttggctgaggaccaaaatagcatgtccttctgtttctcctcaacctcgaatgattatacaccatcaccttc 51016544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 41579192 - 41579238
Alignment:
Q  129 aaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    ||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  41579192 aaccatcacaaacaattatgtgtcatgtcataggcgatttttctttg 41579238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 18441574 - 18441630
Alignment:
Q  54 aaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||| |||||||||||| ||| ||| || |||||||||| ||||||||||    
T  18441574 aaatagcatgttctcccgctcctcgtcagccttgattgattgtacatcggcaccttc 18441630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 54 - 110
Target Start/End: Original strand, 19486648 - 19486704
Alignment:
Q  54 aaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||| |||||||||||| ||| ||| || |||||||||| ||||||||||    
T  19486648 aaatagcatgttctcccgctcctcgtcagccttgattgattgtacatcggcaccttc 19486704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 24701337 - 24701289
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||||||| ||||||||||  |||||| |||||||||||||||||||||    
T  24701337 ggaaccattgcaaacaattttgtgccacgtcataggcgatttttctttg 24701289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 54 - 110
Target Start/End: Complemental strand, 46413305 - 46413249
Alignment:
Q  54 aaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||| ||||||||||||||||||| |||||| || ||||| |||||| ||||||||    
T  46413305 aaatatcatgtcctcccgctcctccgcaacctcgaatgattatacaccagcaccttc 46413249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 30193699 - 30193766
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacct 85  Q
    ||||||| ||||||||||  |||||  |||||||| ||| | ||||||| ||||||||||||||||||    
T  30193699 acagtccatggggcacctgtttttgactgaggaccaaaacaacatgtccacccgctcctcctcaacct 30193766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 55205885 - 55205837
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    ||||||||| |||||||||  |||||| |||||||| ||||||||||||    
T  55205885 ggaaccatcacaaacaattttgtgccacgtcataggtgatttttctttg 55205837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 3494085 - 3494038
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||||||||||||||||||| | || || |||||||| |||||||||||    
T  3494085 ggaaccatcgcaaacaattccatgtcacgtcataggtgatttttcttt 3494038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 3497779 - 3497732
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||||||||||||||||||| | || || |||||||| |||||||||||    
T  3497779 ggaaccatcgcaaacaattccatgtcacgtcataggtgatttttcttt 3497732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 4e-49; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 4e-49
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 34152347 - 34152180
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||||||||||||||||||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34152347 gttgcccgctacagtccctggggcaccttgatttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgactgattgtacaccggcacc 34152248  T
Q  108 ttcagaccattannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| ||        ||||||||| ||||||||| |||| |||||||||||| |||||||||||    
T  34152247 ttcgaacccttcttttttcggaaccatcacaaacaatttcgtgtcatgtcataggcaatttttctttg 34152180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 9e-47
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 44559388 - 44559221
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||||||||||||||| ||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44559388 gttgcccgctacagtctctggggcaccttgatttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgactgattgtacaccggcacc 44559289  T
Q  108 ttcagaccattannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||| ||| ||         |||||||| ||||||||| | || ||||||||||||||||||||||||    
T  44559288 ttcaaacccttcttttttcagaaccatcacaaacaatttcatgtcatgtcataggcgatttttctttg 44559221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 6e-45
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 956516 - 956413
Alignment:
Q  7 agttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcac 106  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  956516 agttgcctgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcac 956417  T
Q  107 cttc 110  Q
    ||||    
T  956416 cttc 956413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 9e-44
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 56140039 - 56140208
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| ||||||    
T  56140039 gttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacactggcacc 56140138  T
Q  108 ttcagaccat--tannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| |  |         |||||||||||||||||| ||||||| |||||||||||||||||||||    
T  56140139 ttcgaacccttcttttttttcagaaccatcgcaaacaattccgtgccacgtcataggcgatttttctttg 56140208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 34528877 - 34528713
Alignment:
Q  12 cccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    ||||||||| |||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||     
T  34528877 cccgctacaatccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcaccttcg 34528778  T
Q  112 gaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
     ||| ||         ||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  34528777 aacccttctttttttcggaaccatcgcaaacaatttcgtgccacgtcataggcgatttttctttg 34528713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 49422819 - 49422651
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||| ||||| ||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  49422819 gttgcccgctaaagtccttggggcaccttgttttggttgaggaccaaaatagcatgtcctcccactcctcctcaacctcgactgattgtacaccggcacc 49422720  T
Q  108 ttcagaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| ||         ||||||||| |||||||||| ||| ||||||||||| ||||||||||||    
T  49422719 ttcgaacccttctttttttcggaaccatcacaaacaattatgtgtcatgtcataggtgatttttctttg 49422651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 6176493 - 6176331
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||      
T  6176493 ccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcaccttcga 6176394  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||| ||         ||||||||||||||||||| | |||||||||||||| || ||||||||    
T  6176393 acccttctttttttcggaaccatcgcaaacaattccatgccatgtcataggtgacttttcttt 6176331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 21016355 - 21016193
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||      
T  21016355 ccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcaccttcga 21016256  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||| ||         ||||||||||||||||||| | |||||||||||||| || ||||||||    
T  21016255 acccttctttttttcggaaccatcgcaaacaattccatgccatgtcataggtgacttttcttt 21016193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 80; E-Value: 8e-38
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 1043873 - 1044037
Alignment:
Q  12 cccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    |||||||||||||||| |||||||| ||||||||||||||| ||||||||||| ||| |||||||||||||||| || |||||||||||||||||||||     
T  1043873 cccgctacagtccctgcggcaccttgttttggttgaggaccaaaatagcatgttctctcgctcctcctcaacctcgagtgattgtacaccggcaccttcg 1043972  T
Q  112 gaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
     ||| ||         |||||||||||||||||||| |||||| |||||| ||||||||||||||    
T  1043973 aacccttctttttttcggaaccatcgcaaacaattatgtgccacgtcatatgcgatttttctttg 1044037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 80; E-Value: 8e-38
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 39589909 - 39590073
Alignment:
Q  12 cccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    |||||||||||||||  |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||  | |||||||||||||||||||||     
T  39589909 cccgctacagtccctacggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcaagtgattgtacaccggcaccttcg 39590008  T
Q  112 gaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
     ||| ||         |||||||||||||||||||||||| || ||||||||| |||||||||||    
T  39590009 aacccttctttttttcggaaccatcgcaaacaattacgtgacacgtcataggcaatttttctttg 39590073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 80; E-Value: 8e-38
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 49095774 - 49095937
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||      
T  49095774 ccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcaccttcga 49095873  T
Q  113 accat--tannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||| |  |        ||||||||||||||||||| | |||||||||||||| || ||||||||    
T  49095874 acccttcttttttttcggaaccatcgcaaacaattccatgccatgtcataggtgacttttcttt 49095937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 41793980 - 41793818
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||| || ||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||      
T  41793980 ccgctacagtccctgcggtaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcaccttcga 41793881  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||| ||         ||||||||||||||||||| | |||||||||||||| || ||||||||    
T  41793880 acccttctttttttcggaaccatcgcaaacaattccatgccatgtcataggtgacttttcttt 41793818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 77; E-Value: 5e-36
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 37867599 - 37867764
Alignment:
Q  11 gcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    |||||||||||||||||||||||||| |||| |||||||||| ||||| |||||||||||||||||||||||||| || ||||| |||||||||||||||    
T  37867599 gcccgctacagtccctggggcaccttgtttttgttgaggaccaaaataacatgtcctcccgctcctcctcaacctcgagtgattatacaccggcaccttc 37867698  T
Q  111 agaccatta-nnnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
      ||| |||        ||||||||| |||||||||  ||||||  ||||||||||||||||||||    
T  37867699 gaacccttatttttttcggaaccatcacaaacaattttgtgccacatcataggcgatttttctttg 37867764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 49572254 - 49572414
Alignment:
Q  16 ctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcagacc 115  Q
    ||||| |||||  |||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||  |||    
T  49572254 ctacaatccctatggcaccttgttttggttgaggaccaaaatagcatgtcatcccgctcctcctcaacctggactgattgtacaccggcaccctcgaacc 49572353  T
Q  116 att-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
     ||         ||||||||| |||||||||| |||| |||||||||||||||||||||||    
T  49572354 cttctttttttcggaaccatcacaaacaattatgtgctatgtcataggcgatttttctttg 49572414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 75; E-Value: 8e-35
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 4784404 - 4784302
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||| |||||||||||||||||| || |||||||||||||||| |    
T  4784404 gttgcccgctacagtccctggggcacattcttttggttgaggaccaaaatagcatgtccccccgctcctcctcaacctcgaatgattgtacaccggcaac 4784305  T
Q  108 ttc 110  Q
    |||    
T  4784304 ttc 4784302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 40352954 - 40352857
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||| ||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  40352954 ccgctacagtcgctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgactgattgtacactggcaccttc 40352857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 6281586 - 6281484
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||| | |||||||||||||||| ||||||||||||||| || ||||||||||||||||||    
T  6281586 gttgcccgctaaagtccctggggcaccttgttttgattgaggatcaaaatagcatgtcctcctgctcctcctcaacctcgagtgattgtacaccggcacc 6281487  T
Q  108 ttc 110  Q
    |||    
T  6281486 ttc 6281484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 42887429 - 42887527
Alignment:
Q  12 cccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||||  ||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||    
T  42887429 cccgctacagtcattggggcaccttcttttggttgaggaccaaaataacatgtcctcccgctcctcctcaacctcgactgattgtacaccagcaccttc 42887527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 70; E-Value: 8e-32
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 55797772 - 55797869
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    |||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||    
T  55797772 ccgctacagtccatgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacactggcaccttc 55797869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 21411029 - 21410937
Alignment:
Q  19 cagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    ||||||||| |||||||  ||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  21411029 cagtccctgtggcacctgcttttggttgaggaccaaaatagcatgtcctcccgcttctcctcaaccttgactgattgtacaccggcaccttca 21410937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 9490611 - 9490781
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||| ||||||||||||||||| |||||| |||||||| |||||||||||||||| ||||||||||||||| || ||||||||||||| |||     
T  9490611 gttgcccgctatagtccctggggcaccttgttttggctgaggaccaaaatagcatgtcctccagctcctcctcaacctcgagtgattgtacaccgacaca 9490710  T
Q  108 ttcagacc---attannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  |||    ||        |||||||| |||||||||| ||||||| |||||||| ||||||||||||    
T  9490711 ttcgaacctttttttttttttcggaaccattgcaaacaatttcgtgccacgtcataggtgatttttctttg 9490781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 51427263 - 51427160
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaa-tagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcac 106  Q
    ||||||||||| |||||||||||| |||| ||||||||||||||| ||| ||||||||||||||||||||||||||||| |||| ||||||||| |||||    
T  51427263 gttgcccgctatagtccctggggcgccttgttttggttgaggaccaaaaatagcatgtcctcccgctcctcctcaacctcgactaattgtacactggcac 51427164  T
Q  107 cttc 110  Q
    ||||    
T  51427163 cttc 51427160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 21412417 - 21412509
Alignment:
Q  19 cagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    ||||||| | |||||||  ||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  21412417 cagtcccagaggcacctgcttttggttgaggaccaaaatagcatgtcctcccgcttctcctcaaccttgactgattgtacaccggcaccttca 21412509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 25145688 - 25145780
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||| ||||||  ||||||||||||||||||||| |||||||| ||||||||||||| ||||| ||| ||||||||||||||||||    
T  25145688 acagtccctggcgcacctgcttttggttgaggaccgaaataacatgtccttccgctcctcctcagcctgggctggttgtacaccggcaccttc 25145780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 36775533 - 36775444
Alignment:
Q  21 gtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    |||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||| || | ||| |||||| ||||||||    
T  36775533 gtccctggggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgaataattatacaccagcaccttc 36775444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 9718413 - 9718504
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||| ||||||  ||| || |||||||| ||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||    
T  9718413 acagtccctggagcacctgcttt-ggctgaggaccaaaatagcatgtcctcccactcctcctcagcctggactggttgtacaccggcaccttc 9718504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 21170635 - 21170727
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    |||||||| |||||||||  |||||| |||||||| |||||||||||||| ||||||||||||||||| || ||||| |||||| ||||||||    
T  21170635 acagtcccgggggcacctgcttttggctgaggaccaaaatagcatgtccttccgctcctcctcaacctcgaatgattatacaccagcaccttc 21170727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 49790983 - 49790891
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||||||||||  |||||| |||||||| ||||| |||||||||||||||||||||||||| || ||||| |||| | ||||||||    
T  49790983 acagtccctggggcacctgcttttggctgaggaccaaaatatcatgtcctcccgctcctcctcaacctcgaatgattatacatcagcaccttc 49790891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 51026842 - 51026750
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||||||||||  |||||| |||||||| |||||||||||| ||||||||||||||||||| || ||||| |||| | ||||||||    
T  51026842 acagtccctggggcacctgcttttggctgaggaccaaaatagcatgtcatcccgctcctcctcaacctcgaatgattatacatcagcaccttc 51026750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 24076287 - 24076369
Alignment:
Q  24 cctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcac 106  Q
    ||||||||||||  ||||||||||||||||||||| || ||||| |||||||||||||||||| | || ||||||||||||||    
T  24076287 cctggggcacctgcttttggttgaggaccgaaataacaagtccttccgctcctcctcaacctgtaatggttgtacaccggcac 24076369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 49816467 - 49816385
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacac 100  Q
    ||||||||| ||||||||  |||||| |||||||| |||||||||||||||| ||||||||||||||| |||||||| |||||    
T  49816467 acagtccctagggcacctgcttttggctgaggaccaaaatagcatgtcctccagctcctcctcaacctcgactgattatacac 49816385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 17292831 - 17292915
Alignment:
Q  26 tggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||  |||| |||||||||| |||||||||||||||| ||||||||||| ||| || || ||||||||||||||||||    
T  17292831 tggggcacctgctttttgttgaggaccaaaatagcatgtcctcctgctcctcctcagccttgaatggttgtacaccggcaccttc 17292915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 45940697 - 45940789
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    |||||| || ||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||| || ||||| |||| | ||||||||    
T  45940697 acagtctctagggcacctgcttttggctgaggacccaaatagcatgtcctcccgctcctcctcaacctcgaatgattatacatcagcaccttc 45940789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 43888544 - 43888477
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacct 85  Q
    ||||||||||||||||||  |||||| ||||| || ||||||||||||||||||||||||||||||||    
T  43888544 acagtccctggggcacctgcttttggctgagggccaaaatagcatgtcctcccgctcctcctcaacct 43888477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 4910687 - 4910594
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    ||||||||| ||||||||  |||||| |||||||| ||||||||||||||||||||| |||||| ||| || ||||| |||| || ||||||||    
T  4910687 acagtccctagggcacctgcttttggatgaggaccaaaatagcatgtcctcccgctcttcctcagcctagaatgattatacatcgacaccttca 4910594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 2774176 - 2774267
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    |||||||| |||||||||  |||||||||| |||| |||||||||||||||||||||||||||||||| || | ||| |||||  ||||||||    
T  2774176 acagtccc-ggggcacctgcttttggttgaagaccaaaatagcatgtcctcccgctcctcctcaacctcgaataattatacacaagcaccttc 2774267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 37959183 - 37959231
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  37959183 ggaaccatcacaaacaattatgtgtcatgtcataggcgatttttctttg 37959231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 42887551 - 42887599
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    ||||||||| ||||||||| |||| |||||||||| |||||||||||||    
T  42887551 ggaaccatcacaaacaattccgtgtcatgtcatagacgatttttctttg 42887599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 40352837 - 40352790
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||||||||||||||||||| | ||||| |||||||| |||||||||||    
T  40352837 ggaaccatcgcaaacaattccatgccacgtcataggtgatttttcttt 40352790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 956394 - 956346
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    ||||||||| |||| |||||  || ||||||||||||||||||||||||    
T  956394 ggaaccatcacaaataattatatgtcatgtcataggcgatttttctttg 956346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 4784277 - 4784229
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    ||||||||| ||||||||| |||||||| ||||||  ||||||||||||    
T  4784277 ggaaccatcacaaacaattccgtgccatttcatagatgatttttctttg 4784229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 174
Target Start/End: Complemental strand, 4623 - 4452
Alignment:
Q  7 agttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcac 106  Q
    |||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4623 agttgcccgctacagtccatggggcaccttgtttttgttgaggaccgaaatagcatgtcctcccgctgctcctcaacctggactgattgtacaccggcac 4524  T
Q  107 cttcagacca----ttannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    |||| |||||    ||        | ||||||| ||||||||| ||||||||||||||||||||||||||||    
T  4523 cttcggaccattctttttttttcggtaaccatcacaaacaatttcgtgccatgtcataggcgatttttcttt 4452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 31)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 18309405 - 18309574
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18309405 gttgcccgctacagtcccttgggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 18309504  T
Q  108 ttcagaccat--tannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| |  |        ||||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  18309505 ttcgaacccttcttttttttcggaaccatcacaaacaattatgtgtcatgtcataggcgatttttctttg 18309574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 3602492 - 3602654
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||      
T  3602492 ccgctacagtccctggg-caccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccgccaccttcga 3602590  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    ||| ||         ||||||||| ||||||||| ||||||||||| |||||||||||||||||    
T  3602591 acccttctttttttcggaaccatcacaaacaatttcgtgccatgtcgtaggcgatttttctttg 3602654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 8539002 - 8539166
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||||||||||||||||||  || ||||| |||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||    
T  8539002 gttgcccgctacagtccctacggtaccttgttttggttgaggaccgaaatagcatgtcctcctgctcctcctcaacctcgagtgattgtacaccggcacc 8539101  T
Q  108 ttcagaccattannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| ||        ||||||||||||||||||| ||||||| |||||||| ||||||||||||    
T  8539102 ttcgaaccctt---ctttcggaaccatcgcaaacaatttcgtgccacgtcataggtgatttttctttg 8539166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 20199485 - 20199587
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20199485 gttgcccgctacagtccctggggcactttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccgacacc 20199584  T
Q  108 ttc 110  Q
    |||    
T  20199585 ttc 20199587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 11028478 - 11028640
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||     
T  11028478 ccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacactggcaccttcaa 11028577  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||||||         ||||||||||||||||||| | ||||| |||||||| |||||||||||    
T  11028578 accattctttttttcggaaccatcgcaaacaattccatgccacgtcataggagatttttcttt 11028640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 34682992 - 34682889
Alignment:
Q  7 agttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcac 106  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  34682992 agttgcccgctacagtccctggggaaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgactgattgtacaccgtcac 34682893  T
Q  107 cttc 110  Q
    ||||    
T  34682892 cttc 34682889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 11347826 - 11347928
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  11347826 gttgcccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcacc 11347925  T
Q  108 ttc 110  Q
    |||    
T  11347926 ttc 11347928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 25499226 - 25499328
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  25499226 gttgcccgctacagtccttggggcaccttgttttggttgaggaccaaaatagtatgtcctcccgctcctcctccacctggactgattgtacaccggcacc 25499325  T
Q  108 ttc 110  Q
    |||    
T  25499326 ttc 25499328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 19035854 - 19035692
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||      
T  19035854 ccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcaccttcga 19035755  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||| ||         ||||||||||||||||||| | |||||||||||||| || ||||||||    
T  19035754 acccttctttttttcggaaccatcgcaaacaattccatgccatgtcataggtgacttttcttt 19035692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 8575320 - 8575159
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    |||||| |||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||      
T  8575320 ccgctatagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacactggcaccttcga 8575221  T
Q  113 accattannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||| |||       |||||||| |||||||||| | ||||| |||||||| |||||||||||    
T  8575220 acccttattttttcggaaccatggcaaacaattccatgccacgtcataggtgatttttcttt 8575159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 6409 - 6312
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  6409 ccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcaccttc 6312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 75; E-Value: 8e-35
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 35927132 - 35927042
Alignment:
Q  20 agtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  35927132 agtccctggggcaccttcttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgactgattgtacatcggcaccttc 35927042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 17 - 174
Target Start/End: Complemental strand, 27660552 - 27660394
Alignment:
Q  17 tacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcagacca 116  Q
    ||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||  |||     
T  27660552 tacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacactggcaccttcgaaccc 27660453  T
Q  117 tt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||         ||||||||||||||||||| | ||||| |||||||| |||||||||||    
T  27660452 ttctttttttcggaaccatcgcaaacaattccatgccacgtcataggtgatttttcttt 27660394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 38855185 - 38855347
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||| || ||||| ||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| |||||||||      
T  38855185 ccgctacagtccctgcggtaccttgttttggttgaggaccgaaataacatgtcctcccgctcctcctcaacctcgagtgattgtacactggcaccttcga 38855284  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||||||         |||||||| |||||||||| | ||||| |||||||| |||||||||||    
T  38855285 accattcttttttttggaaccattgcaaacaattccatgccacgtcataggagatttttcttt 38855347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 14 - 109
Target Start/End: Complemental strand, 1399359 - 1399264
Alignment:
Q  14 cgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacctt 109  Q
    ||||||| ||||||||||||||| ||||| ||||||| | |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  1399359 cgctacaatccctggggcaccttgttttgattgaggatcaaaatagcatgtcctcccgctcctcctcaacctagactaattgtacaccggcacctt 1399264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 35566416 - 35566579
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||| ||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||| |||||| ||||||||| ||||| |||||||| ||||||    
T  35566416 gttggccgctacagtccctgaggcaccttgttttggttgaggaccaaaatagcatgtcctcacgctccgcctcaacctcgactggttgtacactggcacc 35566515  T
Q  108 ttcagacc--attannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttt 169  Q
    |||  |||   ||        ||||||||| |||||||||  ||||||||||||||||||||||    
T  35566516 ttcgaaccttttttttctttcggaaccatcacaaacaattttgtgccatgtcataggcgatttt 35566579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 1972533 - 1972625
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||||||||||  ||||| ||||||||| |||||||||||||||||||||||||||||||| || ||||| |||||| ||||||||    
T  1972533 acagtccctggggcacctgcttttgcttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgaatgattatacaccagcaccttc 1972625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 7484546 - 7484454
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||| || ||||| |||||| ||||||||    
T  7484546 acagtccctggggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgaatgattatacaccagcaccttc 7484454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 13 - 110
Target Start/End: Original strand, 30710630 - 30710727
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    |||||||||||||||  | ||||| ||||||| ||||||||||||| ||||||||| |||||||||||||||| || ||||||||||| |||||||||    
T  30710630 ccgctacagtccctgcagtaccttgttttggtcgaggaccgaaataacatgtcctctcgctcctcctcaacctcgagtgattgtacactggcaccttc 30710727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 6792500 - 6792408
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||| ||||| ||  |||||| |||||||| |||||||||||||||||||||||||||||||| || ||||| |||||| ||||||||    
T  6792500 acagtccctagggcatctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgaatgattatacaccagcaccttc 6792408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 7400867 - 7400955
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcac 106  Q
    ||||||| || ||||||| |||||||||||||||||||||| |||||||| ||||||||||||| |||||| || ||||| ||||||||    
T  7400867 acagtccttgaggcacctgattttggttgaggaccgaaataacatgtccttccgctcctcctcagcctggaatggttgtaaaccggcac 7400955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 109
Target Start/End: Complemental strand, 4723124 - 4723053
Alignment:
Q  38 ttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacctt 109  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||| || ||||| |||||| |||||||    
T  4723124 ttttggctgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgaatgattatacaccagcacctt 4723053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 36349356 - 36349262
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcaga 113  Q
    ||||||||||| ||||||  |||||| |||||||| ||| ||||||||||||||||| |||||||||| || ||||| |||||| |||||||||||    
T  36349356 acagtccctggagcacctgcttttggctgaggaccaaaa-agcatgtcctcccgctcttcctcaacctcgaatgattatacaccagcaccttcaga 36349262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 62 - 175
Target Start/End: Complemental strand, 41202410 - 41202296
Alignment:
Q  62 tgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcagaccattannnnnnn-ggaaccatcgcaaacaattacgtgccatgtcata 160  Q
    ||||||||| ||||||||||||||  | |||||||||||||||||||||  ||||||         ||||||||| |||||||||| |||||||||||||    
T  41202410 tgtcctcccactcctcctcaacctcaagtgattgtacaccggcaccttcgaaccattttttttttcggaaccatcacaaacaattatgtgccatgtcata 41202311  T
Q  161 ggcgatttttctttg 175  Q
    | |||||||||||||    
T  41202310 gccgatttttctttg 41202296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 1695964 - 1696056
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||| ||||||||||  |||||| ||||| || |||||||||||||||||||||||||||||||| || | ||| ||||||  |||||||    
T  1695964 acagtccttggggcacctgcttttggctgagggccaaaatagcatgtcctcccgctcctcctcaacctcgaatcattatacaccaacaccttc 1696056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 10978447 - 10978539
Alignment:
Q  19 cagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    |||| ||||||| ||||  ||||||||||||||| ||||| || ||||| ||||||||||||| | || | ||||||||||||||||||||||    
T  10978447 cagttcctggggaacctgcttttggttgaggaccaaaataacaagtccttccgctcctcctcatcatgtaatgattgtacaccggcaccttca 10978539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 541522 - 541474
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  541522 ggaaccatcgcaaacaatttcgtgccacgtcataggcgatttttctttg 541474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 34682861 - 34682813
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  34682861 ggaaccatcacaaacaattatgtgccatgtcataggcgatttttctttg 34682813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 86
Target Start/End: Original strand, 31239161 - 31239229
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctg 86  Q
    ||||||||| |||||| |  ||||||||||||||| |||||||||||||| || |||||||||| ||||    
T  31239161 acagtccctagggcacgtgcttttggttgaggaccaaaatagcatgtccttccactcctcctcagcctg 31239229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 6293 - 6247
Alignment:
Q  128 gaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    |||||||||||||||||| | |||||  |||||||||||||||||||    
T  6293 gaaccatcgcaaacaattccatgccacatcataggcgatttttcttt 6247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 20199612 - 20199660
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    ||||||||| | |||||||  |||||||||||| |||||||||||||||    
T  20199612 ggaaccatcactaacaattttgtgccatgtcatgggcgatttttctttg 20199660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 2e-47; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 41623227 - 41623395
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||||||||||||||||||||| |||||| |||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||| ||||    
T  41623227 gttgcccgctacagtccctggggcaccttgttttggatgaggaccaaaatagcatgtccttccgctcctcctcaacctcgactgattgtacaccgacacc 41623326  T
Q  108 ttcagaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||||||         ||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  41623327 ttcgaaccattctttttttcggaaccatcacaaacaatttcgtgccatgtcataggcgatttttctttg 41623395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 9e-44
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 28113469 - 28113298
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||||||||||||||||||| |||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  28113469 gttgcccgctacagtccctgtggcaccttgttttggttgaggaccaaaataacatgtcctcccgctcctcctcaacctcgactgattgtacaccggcacc 28113370  T
Q  108 ttcagaccatta----nnnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||| ||| |||           ||||||||| |||||||||| ||| |||||||||| |||||||||||||    
T  28113369 ttcaaacccttatttttttttccggaaccatcacaaacaattatgtgtcatgtcatagacgatttttctttg 28113298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 17840345 - 17840513
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||     
T  17840345 gttgcccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcaca 17840444  T
Q  108 ttcagaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| ||         |||||||||||||||||||  |||||| |||||||||||||||||||||    
T  17840445 ttcgaacccttctttttttcggaaccatcgcaaacaattcagtgccacgtcataggcgatttttctttg 17840513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 48271797 - 48271965
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||| || ||||||||||||||||||    
T  48271797 gttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcatcccgctcctcctcaacctcgagtgattgtacaccggcacc 48271896  T
Q  108 ttcagaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| ||         ||||||||| ||||||||| |||| |||||||||||| |||||||||||    
T  48271897 ttcgaacccttcttttttacggaaccatcacaaacaatttcgtgtcatgtcataggcaatttttctttg 48271965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 34142001 - 34142165
Alignment:
Q  12 cccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    |||||||||||||||| |||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||| || ||||||||| |||||||||||     
T  34142001 cccgctacagtccctgtggcaccttgttttggttgaggaccaaaatagcatgtcatcccgctcctcctcaacctcgagtgattgtactccggcaccttcg 34142100  T
Q  112 gaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
     ||| ||         ||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  34142101 aacccttctttttttcggaaccatcgcaaacaatttcgtgccacgtcataggcgatttttctttg 34142165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 9366295 - 9366133
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||      
T  9366295 ccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcaccttcga 9366196  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||| ||         ||||||||||||||||||| | |||||||||||||| || ||||||||    
T  9366195 acccttctttttttcggaaccatcgcaaacaattccatgccatgtcataggtgacttttcttt 9366133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 20565790 - 20565952
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||      
T  20565790 ccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcaccttcga 20565889  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||| ||         ||||||||||||||||||| | |||||||||||||| || ||||||||    
T  20565890 acccttctttttttcggaaccatcgcaaacaattccatgccatgtcataggtgacttttcttt 20565952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 42683549 - 42683720
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggc--- 104  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||       
T  42683549 gttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcggc 42683648  T
Q  105 accttcagaccattannnnnnn-ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    ||||||  ||| ||         ||||||||| |||||||||  |||||||| |||||||||||||||||||    
T  42683649 accttcgaacccttctttttttcggaaccatcacaaacaattcagtgccatgccataggcgatttttctttg 42683720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 80; E-Value: 8e-38
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 21186358 - 21186255
Alignment:
Q  7 agttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcac 106  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||    
T  21186358 agttgcccgctacagtccctagggcaccttgttttggttgaggaccaaaataacatgtcctcccgctcctcctcaacctggattgattgtataccggcac 21186259  T
Q  107 cttc 110  Q
    ||||    
T  21186258 cttc 21186255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 36392884 - 36392782
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||||||||||||||||||| |||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||  ||||||    
T  36392884 gttgcccgctacagtccctgaggcaccttgttttggttgaggaccaaaataacatgtcctcccgctcctcctcaacctggactgattgtacaatggcacc 36392785  T
Q  108 ttc 110  Q
    |||    
T  36392784 ttc 36392782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 42504433 - 42504271
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||      
T  42504433 ccgctacagtccctgcggtaccttcttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacactggcaccttcga 42504334  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||| ||         ||||||||||||||||||| | ||||| |||||||| |||||||||||    
T  42504333 acccttctttttttcggaaccatcgcaaacaattccatgccacgtcataggagatttttcttt 42504271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 75; E-Value: 8e-35
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 46861258 - 46861156
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||||| ||||||||||| || || ||||||||||||||||||    
T  46861258 gttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatttcctcccactcctcctcaatctcgagtgattgtacaccggcacc 46861159  T
Q  108 ttc 110  Q
    |||    
T  46861158 ttc 46861156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 45362349 - 45362188
Alignment:
Q  15 gctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcagac 114  Q
    |||||||||| || |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||  ||    
T  45362349 gctacagtccttgcggcaccttcttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcaccttcgaac 45362250  T
Q  115 catt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    | ||          | |||||||||||||||| |||| || |||||||||||||||||||||    
T  45362249 ccttctttttttctgtaccatcgcaaacaatttcgtgtcacgtcataggcgatttttctttg 45362188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 72; E-Value: 5e-33
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 28978296 - 28978128
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||||||||||||||||||| ||| |||| |||| |||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||| |||    
T  28978296 gttgcccgctacagtccctgtggcgccttgtttttgttgaggaccaaaataacatgtcctcccgctcctcctcaacctcgagtgattgtacaccgggacc 28978197  T
Q  108 ttcagaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| ||         ||||||||| ||||||||| ||||||| |||||| ||||||||||||||    
T  28978196 ttcgaacccttctttttttcggaaccatcacaaacaattccgtgccacgtcatatgcgatttttctttg 28978128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 72; E-Value: 5e-33
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 48194115 - 48194279
Alignment:
Q  12 cccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    ||||||| |||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||| ||||||||     
T  48194115 cccgctatagtccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccagcaccttcg 48194214  T
Q  112 gaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
     ||| ||           ||||||||||||||||| |||| ||||||||||||||||||| ||||    
T  48194215 aacccttctttttttccaaaccatcgcaaacaatttcgtgtcatgtcataggcgatttttatttg 48194279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 70; E-Value: 8e-32
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 34157826 - 34157993
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||   ||||||||||| || ||||||||||||||||||    
T  34157826 gttgcccgctacagtccctgtggtaccttgttttggttgaggaccgaaatagcatgtcctcccg---ctcctcaacctcgagtgattgtacaccggcacc 34157922  T
Q  108 ttcagacc---attannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  |||    ||        |||||||||||||||||||  |||||| | |||||||||||||||||||    
T  34157923 ttcgaacccttctttttttttcggaaccatcgcaaacaattttgtgccacggcataggcgatttttctttg 34157993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 4230629 - 4230721
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||||||||||  ||||||||||||| | ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  4230629 acagtccctggggcacctgcttttggttgaggatcaaaatagcatgtcctcccgctcctcctccacctggaatgattgtacaccggcaccttc 4230721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 69; E-Value: 3e-31
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 40589890 - 40590051
Alignment:
Q  15 gctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcagac 114  Q
    ||||| ||||||| |||||||| |||||||||| |||| |||||||||||||||||||||||||||||||| || |||||||||||||||| ||||  ||    
T  40589890 gctacggtccctgcggcaccttgttttggttgatgaccaaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcatcttcgaac 40589989  T
Q  115 catt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    | ||         |||||||||||||||||||  |||||| ||| |||||||||||||||||    
T  40589990 ccttctttttttcggaaccatcgcaaacaattctgtgccacgtcgtaggcgatttttctttg 40590051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 19 - 174
Target Start/End: Complemental strand, 1641734 - 1641578
Alignment:
Q  19 cagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcaga-ccat 117  Q
    |||| ||||||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||| |  |||||||||||||||||||||| | || |    
T  1641734 cagttcctggggcaccttcttttggttgaggaccaaaataacatgtcctcccgctcctcctcaacctcgtttgattgtacaccggcaccttcaaatcctt 1641635  T
Q  118 tannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
             ||||||||| ||  |||||| |||||||||||||||||||||||||||    
T  1641634 cttttttacggaaccatcacattcaattatgtgccatgtcataggcgatttttcttt 1641578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 10225216 - 10225387
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||| |||||||| || ||| |||||||| ||||||||||| ||| ||||||||| ||| |||||||||||||||||| |||||||||||||||||||||    
T  10225216 gttggccgctacaatctctgaggcaccttgttttggttgagaaccaaaatagcatttccccccgctcctcctcaacctcgactgattgtacaccggcacc 10225315  T
Q  108 ttcagacc----attannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||| |||     ||         |||||||| ||||||||| |||||||| ||||||||||||||||||||    
T  10225316 ttcaaacctttttttttttttttagaaccatcacaaacaattccgtgccatatcataggcgatttttctttg 10225387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 22292002 - 22292093
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacctt 109  Q
    ||||||||||||||||||  |||||| | |||||| |||||||||||||||||||||||||||||||| || ||||| |||||| |||||||    
T  22292002 acagtccctggggcacctgcttttggctcaggaccaaaatagcatgtcctcccgctcctcctcaacctcgaatgattatacaccagcacctt 22292093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 3380112 - 3380019
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    ||||||| || |||||||  ||||||||||||||| ||||||||||||||||||||||||||||  ||||||| ||| |||| |||||||||||    
T  3380112 acagtccttgtggcacctgcttttggttgaggaccaaaatagcatgtcctcccgctcctcctcagtctggactaattatacatcggcaccttca 3380019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 15900459 - 15900367
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||||||||||  |||||  |||||||| ||||||||| ||||||| |||||||||| ||| ||||||||||||||| ||||||||    
T  15900459 acagtccctggggcacctgcttttgactgaggaccaaaatagcatatcctcccactcctcctcagcctcgactgattgtacaccagcaccttc 15900367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 43350445 - 43350357
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcac 106  Q
    ||||||||||||||||||  |||||||||| |||| ||||||||||||||||||||||||||||||||  | ||||| |||||| ||||    
T  43350445 acagtccctggggcacctgcttttggttgaagaccaaaatagcatgtcctcccgctcctcctcaacctcaaatgattatacaccagcac 43350357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 20877077 - 20877010
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacct 85  Q
    ||||||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||| |||||    
T  20877077 acagtccctggggcacctgcttttggttgaggaccaaaatagcatgtcctcccgctcctcctaaacct 20877010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 42736147 - 42736239
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    |||||||||||| |||||  |||||| |||||||| ||||||||||| |||||||||||||||||||| || ||||| |||||| ||| |||||    
T  42736147 acagtccctggg-cacctgcttttggctgaggaccaaaatagcatgttctcccgctcctcctcaacctcgaatgattatacaccagcatcttca 42736239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 17184393 - 17184447
Alignment:
Q  56 atagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    |||||||||||||||||||||||||||||| || ||||| |||||| ||||||||    
T  17184393 atagcatgtcctcccgctcctcctcaacctcgaatgattatacaccagcaccttc 17184447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 36392756 - 36392708
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    ||||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  36392756 ggaaccatcacaaacaattatgtgtcatgtcataggcgatttttctttg 36392708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 111
Target Start/End: Complemental strand, 16886044 - 16885958
Alignment:
Q  24 cctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    |||| |||||||  ||||||||||||||| ||||| || |||||  ||||| || ||| |||||||||||||| ||||||||||||||    
T  16886044 cctgtggcacctacttttggttgaggaccaaaataacaagtcctttcgctc-tcttcagcctggactgattgttcaccggcaccttca 16885958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 9e-47; HSPs: 46)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 9e-47
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 35525257 - 35525094
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  35525257 gttgcccgctacattccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcacc 35525158  T
Q  108 ttcagaccattannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttc 171  Q
    |||| ||| |||        |||||||| ||||||||| | |||||||||||||||| ||||||    
T  35525157 ttcaaacccttattttttcagaaccatcacaaacaattccatgccatgtcataggcggtttttc 35525094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 6e-45
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 49428485 - 49428653
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||| |||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  49428485 gttgcccactacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcacc 49428584  T
Q  108 ttcagaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| ||         ||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  49428585 ttcgaacccttctttttttcggaaccatcgcaaacaatttcgtgccacgtcataggcgatttttctttg 49428653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 9e-44
Query Start/End: Original strand, 12 - 174
Target Start/End: Complemental strand, 29761236 - 29761075
Alignment:
Q  12 cccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    |||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||| ||||||||||     
T  29761236 cccgctacagtccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtaca-cggcaccttcg 29761138  T
Q  112 gaccattannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
     ||| ||        ||||||||||||||||||| ||||||| ||||||||||||||||||||    
T  29761137 aacccttcttttttcggaaccatcgcaaacaattccgtgccacgtcataggcgatttttcttt 29761075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 46142515 - 46142413
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  46142515 gttgcccgctacagtcccaggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctgaactgattgtacaccggcacc 46142416  T
Q  108 ttc 110  Q
    |||    
T  46142415 ttc 46142413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 51270953 - 51271117
Alignment:
Q  12 cccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    |||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || ||| |||||||||||||||||     
T  51270953 cccgctacagtccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgagtgaatgtacaccggcaccttcg 51271052  T
Q  112 gaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
     ||| ||         ||||||||||||||||||| |||| || |||||||||||||||||||||    
T  51271053 aacccttctttttttcggaaccatcgcaaacaattccgtgtcacgtcataggcgatttttctttg 51271117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 18974457 - 18974555
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcac 106  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  18974457 gttgtccgctacagtccctggggcaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaaccaggactgtttgtacaccggcac 18974555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 83; E-Value: 1e-39
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 36911031 - 36911196
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||      
T  36911031 ccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctccttctcaacctcgactgattgtacaccggcaccttcga 36911130  T
Q  113 acc---attannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||    ||        ||||||||| ||||||||| |||||||||||||| | ||||||||||||    
T  36911131 acccttctttttttttcggaaccatcacaaacaatttcgtgccatgtcatatgtgatttttctttg 36911196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 8e-38
Query Start/End: Original strand, 8 - 111
Target Start/End: Original strand, 13974072 - 13974175
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||  ||||||||||||||||| ||||||||||||||||||    
T  13974072 gttgcccgctacagtccctggggcaccttgttttggttgaggaacaaaatagcatgtcctccatctcctcctcaacctggagtgattgtacaccggcacc 13974171  T
Q  108 ttca 111  Q
    ||||    
T  13974172 ttca 13974175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 80; E-Value: 8e-38
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 41803372 - 41803540
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||||||||| |||| |||||| ||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  41803372 gttgcccgctacagtccttgggacaccttgttttggttgaggaccaaaataacatgtcctcccgctcctcctcaacctcgactgattgtacaccggcacc 41803471  T
Q  108 ttcagaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| ||         ||||||||| ||||||||| | ||  |||||||||||||||||||||||    
T  41803472 ttcgaacccttcttttttttggaaccatcacaaacaatttcttgttatgtcataggcgatttttctttg 41803540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 80; E-Value: 8e-38
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 44336974 - 44336810
Alignment:
Q  12 cccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    |||||||||||||||| ||||||||  |||||||||||||| |||||||||||||||||||| ||| ||||||| || |||||||||||||||||||||     
T  44336974 cccgctacagtccctgcggcaccttgatttggttgaggaccaaaatagcatgtcctcccgcttctcttcaacctcgagtgattgtacaccggcaccttcg 44336875  T
Q  112 gaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
     ||| ||         ||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  44336874 aacccttctttttttcggaaccatcgcaaacaattccgtgccacgtcataggcgatttttctttg 44336810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 26494604 - 26494706
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||| |||||    
T  26494604 gttgcccgctacagtccctggagcaccttcttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacttcgactgattgtacacctgcacc 26494703  T
Q  108 ttc 110  Q
    |||    
T  26494704 ttc 26494706  T

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Target: chr1; HSP #12
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 29437080 - 29437246
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||||||||||||||||||||| |||||| ||||||||||||||| ||||| |||||||||||||||||||||||| | || |||||||||||| |||||    
T  29437080 gttgcccgctacagtccctggg-caccttgttttggttgaggaccaaaataacatgtcctcccgctcctcctcaacttcgagtgattgtacaccagcacc 29437178  T
Q  108 ttcagaccattannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| ||         |||||||| ||||||||| ||||||||||||||| |||||||||||||    
T  29437179 ttcgaaccctttttttttccgaaccatcacaaacaatttcgtgccatgtcatagacgatttttctttg 29437246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 42570851 - 42570749
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||| |||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  42570851 gttgccctctacagtccctgaggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgactgattgtacgccggcacc 42570752  T
Q  108 ttc 110  Q
    |||    
T  42570751 ttc 42570749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 78; E-Value: 1e-36
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 13634474 - 13634312
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||     
T  13634474 ccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctactcctcaacctcgagtgattgtacactggcaccttcaa 13634375  T
Q  113 acca-ttannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    |||| ||        ||||||||||||||||||| | ||||| |||||||  |||||||||||    
T  13634374 accattttttttttcggaaccatcgcaaacaattccatgccacgtcatagaagatttttcttt 13634312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 6436866 - 6437038
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||||| ||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||  |||||| |||||||||||||||     
T  6436866 gttgcccgctacaatccctggggcaccatgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaatttggactaattgtacaccggcaca 6436965  T
Q  108 ttcagacc-----attannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  |||      ||        ||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  6436966 ttcgaacctttttttttttttttcggaaccatcacaaacaattccgtgccatgtcataggcgatttttctttg 6437038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 49397792 - 49397960
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||||||||| ||||||||| | ||||||| || |||| |||||| |||||||||||||| |||||||||| |||||||||||||||||||||    
T  49397792 gttgcccgctacagtccttggggcaccgtgttttggtcgatgaccaaaatagtatgtcctcccgctcatcctcaacctcgactgattgtacaccggcacc 49397891  T
Q  108 ttcaga-ccattannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
     ||||| || ||        ||||||||| |||||||||  |||||||||||||| |||||||||||||    
T  49397892 atcagacccttttttttttcggaaccatcacaaacaattctgtgccatgtcatagacgatttttctttg 49397960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 14172802 - 14172718
Alignment:
Q  26 tggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  14172802 tggggcaccttcttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgactgattgtacaccggcaccttc 14172718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 72; E-Value: 5e-33
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 26634249 - 26634166
Alignment:
Q  27 ggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26634249 ggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgactgattgtacaccggcaccttc 26634166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 72; E-Value: 5e-33
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 48227657 - 48227825
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||||||||||||||||||| || ||||| ||||||||||||||| ||||||||||||||| |||||||||||||||| ||  ||||||||| |||||||    
T  48227657 gttgcccgctacagtccctgcggtaccttgttttggttgaggaccaaaatagcatgtcctctcgctcctcctcaacctcgagcgattgtacatcggcacc 48227756  T
Q  108 ttcagaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| ||         |||||||||||||||||||  |||||| ||||||| |||||||||||||    
T  48227757 ttcgaacccttctttttttcggaaccatcgcaaacaattctgtgccacgtcatagacgatttttctttg 48227825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 72; E-Value: 5e-33
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 49925509 - 49925341
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||||||||||||||||||  |||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||| || |||||||||||||||||     
T  49925509 gttgcccgctacagtccctaaggcaccttgttttggttgaggaccgaaataacatgtcctcccgctcctcgtcaacctcgagtgattgtacaccggcaca 49925410  T
Q  108 ttcagaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| ||         ||||||||| |||||||||  |||||| |||||||| ||||||||||||    
T  49925409 ttcgaacctttctttttttcggaaccatcacaaacaattttgtgccacgtcataggtgatttttctttg 49925341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 24363127 - 24363025
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||| ||||||||||||| ||||||| ||||||||||||||| ||||||||| ||||||| |||||||||||||  |||||||||||||||||||||    
T  24363127 gttgcccactacagtccctggagcaccttcttttggttgaggaccaaaatagcatatcctcccactcctcctcaaccccgactgattgtacaccggcacc 24363028  T
Q  108 ttc 110  Q
    |||    
T  24363027 ttc 24363025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 67; E-Value: 5e-30
Query Start/End: Original strand, 13 - 175
Target Start/End: Complemental strand, 27485777 - 27485613
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    |||||||||||| || |||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||| || ||||||||||||   ||||||      
T  27485777 ccgctacagtcc-tgcggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctcaacctcgagtgattgtacacctataccttcga 27485679  T
Q  113 acc---attannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||    ||        ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27485678 acccttctttttttttcggaaccatcgcaaacaattacgtgccacgtcataggcgatttttctttg 27485613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 23343677 - 23343766
Alignment:
Q  22 tccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    ||||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| |||||| |||||||||    
T  23343677 tccctggggcacctgcttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgaatgattatacaccagcaccttca 23343766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 35585956 - 35585864
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||| || ||||| |||||| ||||||||    
T  35585956 acagtccctggggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgaatgattatacaccagcaccttc 35585864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 15355836 - 15355746
Alignment:
Q  20 agtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||| ||||  |||||| |||||||| |||||||||||||||||||||||||||||||| || ||||| |||||| ||||||||    
T  15355836 agtccctggggtacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgaatgattatacaccagcaccttc 15355746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 16531244 - 16531151
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    ||||||| ||||||||||  ||||||||||||| | ||||||||||||||||| |||||||||| ||| || | ||||||||||||||||||||    
T  16531244 acagtccttggggcacctgcttttggttgaggatcaaaatagcatgtcctcccactcctcctcagcctagaataattgtacaccggcaccttca 16531151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 106
Target Start/End: Original strand, 37779302 - 37779390
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcac 106  Q
    ||||||||||||||||||  |||||| |||||||| ||||||||||||||||| |||||||||||||| || ||||| |||||| ||||    
T  37779302 acagtccctggggcacctgcttttggctgaggaccaaaatagcatgtcctcccactcctcctcaacctcgaatgattatacaccagcac 37779390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 38044258 - 38044166
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    |||||||||| |||||||  ||||||||||||||  |||||||||||||||||||||||||||||||| || ||||| ||||||  |||||||    
T  38044258 acagtccctgaggcacctgcttttggttgaggacaaaaatagcatgtcctcccgctcctcctcaacctcgaatgattatacaccaacaccttc 38044166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 39856297 - 39856205
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||||||||||  |||||| |||||||| |||||||||||||||| ||||||||||||||| || ||||| ||||||  |||||||    
T  39856297 acagtccctggggcacctgcttttggctgaggaccaaaatagcatgtcctcctgctcctcctcaacctcgaatgattatacaccaacaccttc 39856205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 17685383 - 17685295
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcac 106  Q
    ||||||||| ||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||| || ||||  |||||| ||||    
T  17685383 acagtccctagggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgaatgatcatacaccagcac 17685295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 24269421 - 24269330
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||| ||||||||  ||||||  ||||||| |||||||||||||||||||||||||||||||| || ||| | |||||| ||||||||    
T  24269421 acagtccctagggcacctgcttttggccgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgaatga-tatacaccagcaccttc 24269330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 35186157 - 35186249
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    |||||||||||||||| |  |||||| |||| ||| ||||||||||| |||||||||||||||||||| || ||||| ||||||  |||||||    
T  35186157 acagtccctggggcacttgcttttggctgagaaccaaaatagcatgttctcccgctcctcctcaacctcgaatgattatacaccaccaccttc 35186249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 49260733 - 49260641
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||||| ||||  |||||| |||||||| |||||||||||||| |||||| |||||||||| || | ||| |||||| ||||||||    
T  49260733 acagtccctggggtacctgcttttggctgaggaccaaaatagcatgtccttccgctcatcctcaacctcgaatcattatacaccagcaccttc 49260641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 12790324 - 12790234
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    ||||||||||||||||||  |||||| |||||||| |||||||||||||||||    ||||||||||| || ||||| |||||| |||||||||    
T  12790324 acagtccctggggcacctgcttttggctgaggaccaaaatagcatgtcctccc---actcctcaacctcgaatgattatacaccagcaccttca 12790234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 14771817 - 14771744
Alignment:
Q  26 tggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtaca 99  Q
    ||||||||||  ||||||||||| ||| ||||| |||||||||||||||||||||| ||||| |||||| ||||    
T  14771817 tggggcacctgcttttggttgagaaccaaaatatcatgtcctcccgctcctcctcagcctggtctgattataca 14771744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 18974592 - 18974640
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  18974592 ggaaccatcacaaacaattacgtgccatgtcataggcaatttttctttg 18974640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 40532428 - 40532366
Alignment:
Q  21 gtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaac 83  Q
    ||||||| |||||||  |||||| |||||||  ||||||||||||||||||||||||||||||    
T  40532428 gtccctgaggcacctgcttttggctgaggacaaaaatagcatgtcctcccgctcctcctcaac 40532366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 13284606 - 13284675
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctc 77  Q
    ||||||||||||||||||| |||||| |  ||||  ||||||||| ||||||||||||||| ||||||||    
T  13284606 gttgcccgctacagtcccttgggcacttgcttttcattgaggaccaaaatagcatgtcctctcgctcctc 13284675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 42570728 - 42570680
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    ||||||||| ||||||||| ||||||||||||||||| |||||||||||    
T  42570728 ggaaccatcacaaacaattccgtgccatgtcataggcaatttttctttg 42570680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 174
Target Start/End: Original strand, 13284688 - 13284735
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||||||||| ||||||||| |||| |||||||||||||||||||||||    
T  13284688 ggaaccatcacaaacaattccgtgtcatgtcataggcgatttttcttt 13284735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 26634140 - 26634093
Alignment:
Q  128 gaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||||||| | |||||||| ||||||||||||||||||||||||||||    
T  26634140 gaaccatcactaacaattatgtgccatgtcataggcgatttttctttg 26634093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 24363006 - 24362959
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||||||||| ||||||||| | || |||||||||||||||||||||||    
T  24363006 ggaaccatcacaaacaattccatgtcatgtcataggcgatttttcttt 24362959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 46142387 - 46142341
Alignment:
Q  129 aaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    ||||||| |||||||||  ||||||| ||||||||||||||||||||    
T  46142387 aaccatcacaaacaattttgtgccatatcataggcgatttttctttg 46142341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 31451507 - 31451454
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccg 71  Q
    |||||||| ||||||| |  ||||||||||||||| ||||||||||||| ||||    
T  31451507 acagtccccggggcacttgcttttggttgaggaccaaaatagcatgtccacccg 31451454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 14172697 - 14172649
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    ||||| ||| |||||||||| ||||||||||||||| ||||||| ||||    
T  14172697 ggaactatcacaaacaattatgtgccatgtcataggtgatttttttttg 14172649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 26494729 - 26494777
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||| |||| ||||||||| |||| ||||| ||||||||||||||||||    
T  26494729 ggaatcatcacaaacaatttcgtgtcatgtaataggcgatttttctttg 26494777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 1e-42; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 41017033 - 41016865
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||| |||| |||||||||| |  ||||||||||||||||||    
T  41017033 gttgcccgctacagtccctgtggtaccttgttttggttgaggaccgaaatagcatgtcctcctgctcatcctcaacctcgtgtgattgtacaccggcacc 41016934  T
Q  108 ttcagaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| ||         |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41016933 ttcgaacccttctttttttcggaaccattgcaaacaattacgtgccatgtcataggcgatttttctttg 41016865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 41276215 - 41276379
Alignment:
Q  12 cccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    |||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| |||||||||||||||     
T  41276215 cccgctacagtccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgagtgattatacaccggcaccttcg 41276314  T
Q  112 gaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
     ||| ||         ||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  41276315 aacccttctttttttcggaaccatcgcaaacaattccgtgccacgtcataggcgatttttctttg 41276379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 21 - 175
Target Start/End: Complemental strand, 18439349 - 18439194
Alignment:
Q  21 gtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcagaccatt-a 119  Q
    |||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||| ||      
T  18439349 gtccctagggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctggattgattgtacatcggcaccttcaaacccttct 18439250  T
Q  120 nnnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
           ||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  18439249 ttttttcggaaccatcacaaacaattacgtgtcatgtcataggcgatttttctttg 18439194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 6e-42
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 28167939 - 28168041
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  28167939 gttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgactgattgtacaccgacacc 28168038  T
Q  108 ttc 110  Q
    |||    
T  28168039 ttc 28168041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 8e-38
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 41856061 - 41855893
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||||||||||||||||||||| |||||||| || ||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  41856061 gttgcccgctacagtccctggggcaccttgttttggttaagaaccaaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcacc 41855962  T
Q  108 ttcagaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| ||         ||||||||| |||||||||  |||||| |||||||| ||||||||||||    
T  41855961 ttcgaacccttctttttttcggaaccatcacaaacaattctgtgccacgtcataggtgatttttctttg 41855893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 24862486 - 24862650
Alignment:
Q  12 cccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    |||||||||||||||  |||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||| || |||||||| ||| ||||||||     
T  24862486 cccgctacagtccctacggcaccttgttttggttgaggaccaaaatagcatgtcctcccactcctcctcaacctcgagtgattgtataccagcaccttcg 24862585  T
Q  112 gaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
     ||| ||         |||||||||||||||||||| |||||| |||||||||||||||||||||    
T  24862586 aacccttctttttttcggaaccatcgcaaacaattatgtgccacgtcataggcgatttttctttg 24862650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 8e-35
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 22550206 - 22550368
Alignment:
Q  12 cccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    |||||||| ||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||  |  |||||||||||||||| ||||    
T  22550206 cccgctactgtccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacct-cagagattgtacaccggcacattca 22550304  T
Q  112 gaccattannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
     ||| ||        | |||||||||||||||||  |||||| |||||||||||||||||||||    
T  22550305 aacccttcttttttcgtaaccatcgcaaacaattctgtgccacgtcataggcgatttttctttg 22550368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 8e-35
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 42604599 - 42604689
Alignment:
Q  20 agtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  42604599 agtccctggggcaccttgttttggttgaggatcgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcaccttc 42604689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 484432 - 484335
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||||||| || ||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  484432 ccgctacagtccctgcggtaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcaccttc 484335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 74; E-Value: 3e-34
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 15031499 - 15031337
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||| || ||||| ||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||| |||||||||      
T  15031499 ccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatatcctcccgctcctcctcaacctcgagtgattgtacactggcaccttcga 15031400  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||| ||         ||||||||||||||||||| | ||||| |||||||| |||||||||||    
T  15031399 acccttctttttttcggaaccatcgcaaacaattccatgccacgtcataggtgatttttcttt 15031337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 45065818 - 45065980
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    |||||||||||| || || ||||| |||||||||||||||||||||||||||||| |||||||||| |||||| || ||||||||||| |||||||||      
T  45065818 ccgctacagtccatgcggtaccttgttttggttgaggaccgaaatagcatgtccttccgctcctccccaacctcgagtgattgtacactggcaccttcga 45065917  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||| ||         ||||||||||||||||||| | ||||| |||||||| |||||||||||    
T  45065918 acccttctttttttcggaaccatcgcaaacaatttcatgccacgtcataggtgatttttcttt 45065980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 40703505 - 40703599
Alignment:
Q  16 ctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||||||||||||| ||||||||||||| |||||||||||||||||  |||||||||||||||  | ||||||||||||| |||||||    
T  40703505 ctacagtccctggggcaccttgttttggttgaggatcgaaatagcatgtcctcttgctcctcctcaacctctagtgattgtacaccgacaccttc 40703599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 26487612 - 26487704
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||| || ||||| |||||| ||||||||    
T  26487612 acagtccctggggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgaatgattatacaccagcaccttc 26487704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 44051572 - 44051666
Alignment:
Q  12 cccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcac 106  Q
    |||||||||||||||  |||||| | ||||| ||||||||| ||||||||||||||||||||||| |||||||| || |||||||||||||||||    
T  44051572 cccgctacagtccctacggcaccctcttttgattgaggaccaaaatagcatgtcctcccgctccttctcaacctcgagtgattgtacaccggcac 44051666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 42167990 - 42167900
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacct 108  Q
    |||||||| |||||||||  |||||| |||||||| |||||||||||||||||||||||||||||||| ||  |||| |||||| ||||||    
T  42167990 acagtccccggggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctcaaccttgaacgattatacaccagcacct 42167900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 38032958 - 38032866
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    |||||||| ||| |||||  |||||| |||||||| |||||||||||||||||||||||||| ||||| || ||||| |||||| ||||||||    
T  38032958 acagtccccgggacacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctccttaacctcgaatgattatacaccagcaccttc 38032866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 175
Target Start/End: Original strand, 38872351 - 38872461
Alignment:
Q  67 tcccgctcctcctcaacctggactgattgtacaccggcaccttcagaccat--tannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcg 164  Q
    |||||||||||||||||||||| |||||||||||||||||||||  ||  |  |        | ||||||| ||||||||| ||||||||||||||||||    
T  38872351 tcccgctcctcctcaacctggattgattgtacaccggcaccttcgaactcttcttttttttcgaaaccatcacaaacaatttcgtgccatgtcataggcg 38872450  T
Q  165 atttttctttg 175  Q
    |||||||||||    
T  38872451 atttttctttg 38872461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 19241711 - 19241635
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgatt 94  Q
    ||||||||||||||| ||  |||||| |||||||  |||||| ||||||||||||||||||||| ||| || |||||    
T  19241711 acagtccctggggcaactgcttttgggtgaggacaaaaatagtatgtcctcccgctcctcctcacccttgaatgatt 19241635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 19314895 - 19314819
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgatt 94  Q
    ||||||||||||||| ||  |||||| |||||||  |||||| ||||||||||||||||||||| ||| || |||||    
T  19314895 acagtccctggggcaactgcttttgggtgaggacaaaaatagtatgtcctcccgctcctcctcacccttgaatgatt 19314819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 28168069 - 28168117
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    ||||||||| ||||||||| ||||||||||||||||| |||||||||||    
T  28168069 ggaaccatcacaaacaatttcgtgccatgtcataggcaatttttctttg 28168117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 110
Target Start/End: Original strand, 10205589 - 10205671
Alignment:
Q  28 gggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||  |||||| | |||||| ||||| || ||||| ||||||||||||  ||| || |||||||||||||||||||||    
T  10205589 gggcacctgcttttgggtcaggaccaaaataacaagtccttccgctcctcctcggcctagaatgattgtacaccggcaccttc 10205671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 44051693 - 44051739
Alignment:
Q  129 aaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||||||||||||||||  |||||| |||||||||||||||||||||    
T  44051693 aaccatcgcaaacaattctgtgccacgtcataggcgatttttctttg 44051739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 31171115 - 31171049
Alignment:
Q  45 tgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    |||||||||||||| |||||  ||| |||||||||||  ||| |||| |||||||||||||| ||||    
T  31171115 tgaggaccgaaataacatgtattcctgctcctcctcagtctgaactggttgtacaccggcactttca 31171049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 484315 - 484270
Alignment:
Q  129 aaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||||||||||||||||| | |||||||||||||| || ||||||||    
T  484315 aaccatcgcaaacaattccatgccatgtcataggtgacttttcttt 484270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 24629094 - 24629009
Alignment:
Q  24 cctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacctt 109  Q
    ||||||| ||||  ||||||||||||| | ||||| || |||||  | |||||||||| | |||| |||||||||||| |||||||    
T  24629094 cctggggaacctgcttttggttgaggatccaaataccaagtcctttccctcctcctcagcttggaatgattgtacaccagcacctt 24629009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 40703619 - 40703667
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    ||||||||| |||||||||  |||||| |||||||| ||||||||||||    
T  40703619 ggaaccatcacaaacaattttgtgccacgtcataggtgatttttctttg 40703667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 1e-42; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 13403956 - 13404124
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||    
T  13403956 gttgcccgctacagtccctggggcacctttttttggttgaggaccgaaatagcatgtcctctcgctcctcctcaacctcgactgattgtacatcggcacc 13404055  T
Q  108 ttcagaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| ||         | ||||||   |||||||| |||||||||||||||||||||||||||||    
T  13404056 ttcgaacccttcttttttttgaaaccataaaaaacaattccgtgccatgtcataggcgatttttctttg 13404124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 32026686 - 32026518
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||    
T  32026686 gttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtccacccgctcctcctcaacctcgactaattgtacaccggcacc 32026587  T
Q  108 ttcagaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| ||          |||||||  |||| |||| |||||||||||||||||||||||||||||    
T  32026586 ttcgaacccttctttttttcagaaccattacaaataatttcgtgccatgtcataggcgatttttctttg 32026518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 32036745 - 32036577
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||| |||| ||||||||||||||||    
T  32036745 gttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtccacccgctcctcctcaacctcgactaattgtacaccggcacc 32036646  T
Q  108 ttcagaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||  ||| ||          |||||||  |||| |||| |||||||||||||||||||||||||||||    
T  32036645 ttcgaacccttctttttttcagaaccattacaaataatttcgtgccatgtcataggcgatttttctttg 32036577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 6206517 - 6206679
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||      
T  6206517 ccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcaccttcga 6206616  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||| ||         ||||||||||||||||||| | |||||||||||||| || ||||||||    
T  6206617 acccttctttttttcggaaccatcgcaaacaattccatgccatgtcataggtgacttttcttt 6206679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 11693484 - 11693646
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||      
T  11693484 ccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcaccttcga 11693583  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||| ||         ||||||||||||||||||| | |||||||||||||| || ||||||||    
T  11693584 acccttctttttttcggaaccatcgcaaacaattccatgccatgtcataggtgacttttcttt 11693646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 13 - 174
Target Start/End: Original strand, 27641207 - 27641369
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||      
T  27641207 ccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccggcaccttcga 27641306  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||| ||         ||||||||||||||||||||| ||||| |||||||| || ||||||||    
T  27641307 acccttctttttttcggaaccatcgcaaacaattacatgccacgtcataggtgacttttcttt 27641369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 82; E-Value: 5e-39
Query Start/End: Original strand, 8 - 109
Target Start/End: Complemental strand, 34802246 - 34802145
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||||| |||||||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34802246 gttgcctgctacagtccctggggcaccttgttttggttgaggacaaaaatagcatgtcctcccgctcctcctcaacctcgactgattgtacaccggcacc 34802147  T
Q  108 tt 109  Q
    ||    
T  34802146 tt 34802145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 5e-36
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 13616962 - 13616862
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||| ||||    
T  13616962 gttgctcgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacaccgacacc 13616863  T
Q  108 t 108  Q
    |    
T  13616862 t 13616862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 29067625 - 29067788
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||| ||||| |||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| || |||||||||||||  ||||||      
T  29067625 ccgctacagcccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcatcctcaacctcgagtgattgtacaccgaaaccttcga 29067724  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    ||| ||         ||||||||||||||||||| |||||||  ||||||||||||||||||||    
T  29067725 acccttctttttttcggaaccatcgcaaacaattccgtgccacatcataggcgatttttctttg 29067788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 29109214 - 29109377
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcag 112  Q
    ||||||||| ||||| |||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||| || |||||||||||||  ||||||      
T  29109214 ccgctacagcccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcatcctcaacctcgagtgattgtacaccgaaaccttcga 29109313  T
Q  113 accatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    ||| ||         ||||||||||||||||||| |||||||  ||||||||||||||||||||    
T  29109314 acccttctttttttcggaaccatcgcaaacaattccgtgccacatcataggcgatttttctttg 29109377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 32691767 - 32691670
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||  | | ||||||||| | |||||||    
T  32691767 ccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctcaagtaattgtacactgacaccttc 32691670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 7e-23
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 14123853 - 14123955
Alignment:
Q  8 gttgcccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcacc 107  Q
    |||||||||||||||||||| |||||||  ||||| || |||||| || |||||||||||||| |||||||| ||||| ||||||||||||| | |||||    
T  14123853 gttgcccgctacagtccctgcggcacctacttttgattaaggaccaaagtagcatgtcctcccactcctccttaacctcgactgattgtacatcagcacc 14123952  T
Q  108 ttc 110  Q
    |||    
T  14123953 ttc 14123955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 35020310 - 35020248
Alignment:
Q  16 ctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcc 78  Q
    ||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  35020310 ctacagtccctagggcaccttgttttggttgaggaccgaaataacatgtcctcccgctcctcc 35020248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 32133721 - 32133628
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    ||||||||||||| ||||  |||||| |||||||| ||||||||||||||| | |||||| ||| ||| ||||||||| ||||| |||||||||    
T  32133721 acagtccctggggaacctgcttttggctgaggaccaaaatagcatgtcctctcactcctcttcagcctcgactgattgcacaccagcaccttca 32133628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 12397952 - 12398043
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    |||||||||||| |||||  |||||| |||||||| ||||| |||||||||||||||||||||||||| || ||||| ||||||  |||||||    
T  12397952 acagtccctggg-cacctgcttttggctgaggaccaaaatatcatgtcctcccgctcctcctcaacctcgaatgattatacaccaacaccttc 12398043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 20241404 - 20241312
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||| ||| ||||  ||||||||||||||| |||||||||  ||||| |||||||||||| |||||  |||| |||||||||||||||    
T  20241404 acagtcccttgggaacctgcttttggttgaggaccaaaatagcataacctcctgctcctcctcaaactggaacgattatacaccggcaccttc 20241312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 22135388 - 22135296
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||| ||| ||||  ||||||||||||||| |||||||||  ||||| |||||||||||| |||||  |||| |||||||||||||||    
T  22135388 acagtcccttgggaacctgcttttggttgaggaccaaaatagcataacctcctgctcctcctcaaactggaacgattatacaccggcaccttc 22135296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 22142741 - 22142649
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||| ||| ||||  ||||||||||||||| |||||||||  ||||| |||||||||||| |||||  |||| |||||||||||||||    
T  22142741 acagtcccttgggaacctgcttttggttgaggaccaaaatagcataacctcctgctcctcctcaaactggaacgattatacaccggcaccttc 22142649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 33201441 - 33201525
Alignment:
Q  22 tccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcac 106  Q
    ||||||| |||||| |||||||||||||||||| ||| |||||||| |||||| |||||| |||||| || || |||||||||||    
T  33201441 tccctggcgcacctgattttggttgaggaccgatataacatgtccttccgctcttcctcagcctggaatggttatacaccggcac 33201525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 17464550 - 17464487
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctca 81  Q
    |||||||||||| |||||  ||||||||||||||| ||||| ||||||||||||||||||||||    
T  17464550 acagtccctgggacacctgcttttggttgaggaccaaaataacatgtcctcccgctcctcctca 17464487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 42; E-Value: 0.000000000000004
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 14486024 - 14485936
Alignment:
Q  22 tccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    ||||| ||||||||  ||||||||||| ||| ||||| || ||||||  |||||||||||||||||| ||||||||||| ||||||||||    
T  14486024 tccctagggcacctgcttttggttgagaaccaaaataacaagtcctct-gctcctcctcaacctggaatgattgtacactggcaccttca 14485936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 30764014 - 30763946
Alignment:
Q  38 ttttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcac 106  Q
    ||||||||||||||||||||| |||||| | ||||||||||||| |||||| || ||||| ||||||||    
T  30764014 ttttggttgaggaccgaaataacatgtcattccgctcctcctcagcctggaatggttgtaaaccggcac 30763946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 111
Target Start/End: Complemental strand, 21863969 - 21863876
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    |||||| ||||||||| |  ||||| | ||||||| || || |||||||| ||||| ||||||||| |||| |||||||||| |||||||||||    
T  21863969 acagtctctggggcacatgcttttgatcgaggaccaaagtaacatgtccttccgcttctcctcaacttggaatgattgtacatcggcaccttca 21863876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 13616836 - 13616788
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    ||||||||| ||||||||| |||||||  ||||||||||||||||||||    
T  13616836 ggaaccatcacaaacaattccgtgccacatcataggcgatttttctttg 13616788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.0000000009
Query Start/End: Original strand, 127 - 175
Target Start/End: Complemental strand, 35020190 - 35020142
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    ||||||||| |||||||||| |||||| |||||||| ||||||||||||    
T  35020190 ggaaccatcacaaacaattatgtgccacgtcataggtgatttttctttg 35020142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 11181863 - 11181811
Alignment:
Q  29 ggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctca 81  Q
    |||||||  ||||||||||||||| ||||| |||||| | |||||||||||||    
T  11181863 ggcacctgcttttggttgaggaccaaaataacatgtcattccgctcctcctca 11181811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 147 - 174
Target Start/End: Complemental strand, 32133591 - 32133564
Alignment:
Q  147 cgtgccatgtcataggcgatttttcttt 174  Q
    ||||||||||||||||||||||||||||    
T  32133591 cgtgccatgtcataggcgatttttcttt 32133564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 28; E-Value: 0.0000009
Query Start/End: Original strand, 127 - 174
Target Start/End: Complemental strand, 32691651 - 32691604
Alignment:
Q  127 ggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    ||||||||||||||||||| | ||||| ||||||||  ||||||||||    
T  32691651 ggaaccatcgcaaacaattccatgccacgtcataggtaatttttcttt 32691604  T

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Target: scaffold0176 (Bit Score: 84; Significance: 3e-40; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 2926 - 3090
Alignment:
Q  12 cccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttca 111  Q
    |||||||||||||||| |||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||| || ||||||||| |||||||||||     
T  2926 cccgctacagtccctgtggcaccttgttttggttgaggaccaaaatagcatgtcatcccgctcctcctcaacctcgagtgattgtactccggcaccttcg 3025  T
Q  112 gaccatt-annnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
     ||| ||         ||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  3026 aacccttctttttttcggaaccatcgcaaacaatttcgtgccacgtcataggcgatttttctttg 3090  T

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Target: scaffold0494 (Bit Score: 70; Significance: 8e-32; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 70; E-Value: 8e-32
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 5900 - 5803
Alignment:
Q  13 ccgctacagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    ||||||||||||||| || ||||| ||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| |||||||||    
T  5900 ccgctacagtccctgcggtaccttcttttggttgaggacctaaatagcatgtcctcccgctcctcctcaacctcgagtgattgtacactggcaccttc 5803  T

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Target: scaffold0859 (Bit Score: 65; Significance: 7e-29; HSPs: 1)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 18 - 174
Target Start/End: Original strand, 1492 - 1649
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttcaga-cca 116  Q
    |||||||||| |||||||| |||||||||||||  |||||||||||| | |||||||||||||||||| || ||||| |||||||||||||||| | ||     
T  1492 acagtccctgaggcaccttcttttggttgaggatagaaatagcatgttcacccgctcctcctcaacctcgattgattatacaccggcaccttcaaatcct 1591  T
Q  117 ttannnnnnnggaaccatcgcaaacaattacgtgccatgtcataggcgatttttcttt 174  Q
    |          |||||||| ||||||||| ||||||||||||||||||||||||||||    
T  1592 tctattttacagaaccatcacaaacaatttcgtgccatgtcataggcgatttttcttt 1649  T

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Target: scaffold0589 (Bit Score: 47; Significance: 4e-18; HSPs: 1)
Name: scaffold0589
Description:

Target: scaffold0589; HSP #1
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 5456 - 5538
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacac 100  Q
    ||||||||||||||||||  |||||| |||||||| ||||||||||||||||| |||||||| ||||| || ||||| |||||    
T  5456 acagtccctggggcacctggttttggctgaggaccaaaatagcatgtcctcccactcctccttaacctcgaatgattatacac 5538  T

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Target: scaffold0500 (Bit Score: 45; Significance: 6e-17; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 45; E-Value: 6e-17
Query Start/End: Original strand, 18 - 110
Target Start/End: Complemental strand, 1666 - 1574
Alignment:
Q  18 acagtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtacaccggcaccttc 110  Q
    |||||||||||| |||||  |||| |||||||||  ||||| || ||||| |||||||||||||  |||||||||||||||| ||||||||||    
T  1666 acagtccctgggccacctgcttttagttgaggactaaaataacaagtccttccgctcctcctcagtctggactgattgtacatcggcaccttc 1574  T

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Target: scaffold0258 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 99
Target Start/End: Original strand, 9648 - 9727
Alignment:
Q  20 agtccctggggcaccttattttggttgaggaccgaaatagcatgtcctcccgctcctcctcaacctggactgattgtaca 99  Q
    ||||||| |||||| | |||||||||||||||| ||||| |||||||| ||||||||||| ||| |||||| ||||||||    
T  9648 agtccctagggcacatgattttggttgaggaccaaaataacatgtccttccgctcctcctaaacttggacttattgtaca 9727  T

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Target: scaffold0192 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 17025 - 16978
Alignment:
Q  128 gaaccatcgcaaacaattacgtgccatgtcataggcgatttttctttg 175  Q
    |||||||| | ||||||| ||||||||||||||| |||||||||||||    
T  17025 gaaccatcactaacaatttcgtgccatgtcatagacgatttttctttg 16978  T

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