View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4346-Insertion-3 (Length: 585)

Name: NF4346-Insertion-3
Description: NF4346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4346-Insertion-3
NF4346-Insertion-3
[»] chr4 (1 HSPs)
chr4 (15-562)||(52409487-52410034)
[»] chr3 (5 HSPs)
chr3 (15-492)||(7775681-7776158)
chr3 (158-268)||(15272469-15272579)
chr3 (158-268)||(40874446-40874556)
chr3 (408-493)||(15272719-15272804)
chr3 (408-493)||(40874221-40874306)
[»] chr8 (1 HSPs)
chr8 (266-578)||(14197321-14197631)
[»] chr1 (2 HSPs)
chr1 (407-496)||(6060147-6060236)
chr1 (530-581)||(6060096-6060147)
[»] chr5 (1 HSPs)
chr5 (72-478)||(23204691-23205097)
[»] chr6 (3 HSPs)
chr6 (158-268)||(11326276-11326386)
chr6 (408-493)||(11326051-11326136)
chr6 (408-493)||(13223891-13223976)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 6e-97; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 15 - 562
Target Start/End: Complemental strand, 52410034 - 52409487
Alignment:
Q  15 cataaccggtgacgagtatgtgggaaaacattggctatggcagctttcattgccaagtcttgatctgttattattgacactggatatttaccacccattg 114  Q
    ||||| ||||||||||||| ||| || ||||||||||| |||  |||||||| ||| ||||||||||||||||| |||||  ||  ||| |||  |||||    
T  52410034 cataatcggtgacgagtatttggaaacacattggctattgcatttttcattgtcaaatcttgatctgttattatcgacacatgactttttccattcattg 52409935  T
Q  115 catctagccatgttctaaacaaccactcaaacgacctctgagtctcatcttgcaacaaagcacatccaaataagatggattgaaaatgatgattcaatcc 214  Q
    | | ||||||||||  ||| ||||| ||||| ||| |||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  52409934 cctttagccatgtttgaaataaccattcaaaagacttctctgtctcatcttgcaacaaagcacatccaaataagatagattgaaaatgatgattcaaccc 52409835  T
Q  215 ggtgaagggtgcaaatggcatatcatacttgttggttttatatgttgtatcaaatgtaacaacatcaccaaaaaattgatatgccaatcttgctcttcca 314  Q
        || || |||||||||||    ||||||||||||||||||||||||||||||||||||||||| |||||||  | ||| |||||||| | |||| ||    
T  52409834 aacaaaaggagcaaatggcatgaggtacttgttggttttatatgttgtatcaaatgtaacaacatctccaaaaaccttataagccaatctcgatcttgca 52409735  T
Q  315 tccacccagaagaaatttatcattctatcttcatcatcgcattgtattgcatnnnnnnnnttaggattctcaacttgttttttcttgcaaaatttaaaga 414  Q
    |||||||| || |||||||||||||||||||||||||| ||||||||| |||        || |||| |||| |||| ||| |||| ||||| || || |    
T  52409734 tccacccaaaaaaaatttatcattctatcttcatcatcacattgtatttcataaaaaaaatttggatcctcagcttgctttgtcttacaaaagttgaata 52409635  T
Q  415 cagcttgagcatctcccacatcaagatttcttcttctgagatttctaagatgattccagcaatcccgactagaaaaagcattatcttcaccctgaaacat 514  Q
    |||||||||||||||| |   ||||||| |||||||  ||||||||||| |||||||| ||||| | |||||||||||   || || |||  |  |||||    
T  52409634 cagcttgagcatctccaattacaagattccttcttcgaagatttctaaggtgattccaacaatctctactagaaaaagacatacctccactattgaacat 52409535  T
Q  515 tgtagcaactttccctgtaggtactccttcttcatcaaacttctcaac 562  Q
    | ||||||| || |||||||||| ||| || |||||||||||||||||    
T  52409534 tttagcaacctttcctgtaggtattccctcctcatcaaacttctcaac 52409487  T

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Target: chr3 (Bit Score: 150; Significance: 5e-79; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 15 - 492
Target Start/End: Original strand, 7775681 - 7776158
Alignment:
Q  15 cataaccggtgacgagtatgtgggaaaacattggctatggcagctttcattgccaagtcttgatctgttattattgacactggatatttaccacccattg 114  Q
    ||||| ||||||||||||| ||| || ||||||||||| |||  |||||||| ||| |||||||| |||||||| |||||  ||  ||| |||  |||||    
T  7775681 cataatcggtgacgagtatttggaaacacattggctattgcatttttcattgacaaatcttgatcggttattatcgacacaagactttttccattcattg 7775780  T
Q  115 catctagccatgttctaaacaaccactcaaacgacctctgagtctcatcttgcaacaaagcacatccaaataagatggattgaaaatgatgattcaatcc 214  Q
    | | ||||||||||  ||| ||||| ||||| ||| |||  ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||    
T  7775781 cctttagccatgtttgaaataaccattcaaaagacttctccgtctcatcttgcaacaaagcacatccaaataagatagattgaaaatgatgattcaaccc 7775880  T
Q  215 ggtgaagggtgcaaatggcatatcatacttgttggttttatatgttgtatcaaatgtaacaacatcaccaaaaaattgatatgccaatcttgctcttcca 314  Q
        |  || |||||||||||    ||||||||||||||||||||||||||||||||||||||||| |||||||  | ||| |||||||| | |||| ||    
T  7775881 aacaataggagcaaatggcatgaggtacttgttggttttatatgttgtatcaaatgtaacaacatctccaaaaaccttataagccaatctcgatcttgca 7775980  T
Q  315 tccacccagaagaaatttatcattctatcttcatcatcgcattgtattgcatnnnnnnnnttaggattctcaacttgttttttcttgcaaaatttaaaga 414  Q
    |||||||| || |  ||||||||||||||||||||||| ||||||||| |||         | ||||||||| |||| ||| |||| ||||| || || |    
T  7775981 tccacccaaaaaatttttatcattctatcttcatcatcacattgtatttcataaaaaaaaattggattctcagcttgctttgtcttacaaaagttgaata 7776080  T
Q  415 cagcttgagcatctcccacatcaagatttcttcttctgagatttctaagatgattccagcaatcccgactagaaaaag 492  Q
    || ||||||||||||| |   ||||||| |||||||  ||||||||||| |||||||| ||||| | |||||||||||    
T  7776081 caacttgagcatctccaattacaagattccttcttcgaagatttctaaggtgattccaacaatctctactagaaaaag 7776158  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 268
Target Start/End: Original strand, 15272469 - 15272579
Alignment:
Q  158 ctcatcttgcaacaaagcacatccaaataagatggattgaaaatgatgattcaatccggtgaagggtgcaaatggcatatcatacttgttggttttatat 257  Q
    ||||||||| |  |||||||| |||||||| || |||||| |||||| |||||||||    || || ||||||||||||  ||||||||| || ||||||    
T  15272469 ctcatcttgtagtaaagcacaaccaaataaaattgattgataatgattattcaatccaacaaacggggcaaatggcatactatacttgttagtcttatat 15272568  T
Q  258 gttgtatcaaa 268  Q
    || || |||||    
T  15272569 gtggtgtcaaa 15272579  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 268
Target Start/End: Complemental strand, 40874556 - 40874446
Alignment:
Q  158 ctcatcttgcaacaaagcacatccaaataagatggattgaaaatgatgattcaatccggtgaagggtgcaaatggcatatcatacttgttggttttatat 257  Q
    ||||||||| |  |||||||| |||||||| || |||||| |||||| |||||||||    || || ||||||||||||  ||||||||| || ||||||    
T  40874556 ctcatcttgtagtaaagcacaaccaaataaaattgattgataatgattattcaatccaacaaacggggcaaatggcatactatacttgttagtcttatat 40874457  T
Q  258 gttgtatcaaa 268  Q
    || || |||||    
T  40874456 gtggtgtcaaa 40874446  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 493
Target Start/End: Original strand, 15272719 - 15272804
Alignment:
Q  408 ttaaagacagcttgagcatctcccacatcaagatttcttcttctgagatttctaagatgattccagcaatcccgactagaaaaagc 493  Q
    ||||| ||||||||||||||||| || || | |||| ||||||  ||| |||||| ||||||||| ||||||| | |||| |||||    
T  15272719 ttaaaaacagcttgagcatctccaacgtctaaattttttcttcgaagacttctaacatgattccaacaatccctattagagaaagc 15272804  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 493
Target Start/End: Complemental strand, 40874306 - 40874221
Alignment:
Q  408 ttaaagacagcttgagcatctcccacatcaagatttcttcttctgagatttctaagatgattccagcaatcccgactagaaaaagc 493  Q
    ||||| ||||||||||||||||| || || | |||| ||||||  ||| |||||| ||||||||| ||||||| | |||| |||||    
T  40874306 ttaaaaacagcttgagcatctccaacgtctaaattttttcttcgaagacttctaacatgattccaacaatccctattagagaaagc 40874221  T

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Target: chr8 (Bit Score: 101; Significance: 9e-50; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 266 - 578
Target Start/End: Original strand, 14197321 - 14197631
Alignment:
Q  266 aaatgtaacaacatcaccaaaaaattgatatgccaatcttgctcttccatccacccagaagaaatttatcattctatcttcatcatcgcattgtattgca 365  Q
    |||||| ||||||||||||||||||  ||||| |||||||||||||| ||||||||| ||  |||| ||||||| |||||||||||  ||  ||||||||    
T  14197321 aaatgttacaacatcaccaaaaaatcaatatgacaatcttgctcttctatccacccaaaaagaatt-atcattccatcttcatcatgacaccgtattgca 14197419  T
Q  366 tnnnnnnnnttaggattctcaacttgttttttcttgcaaaatttaaagacagcttgagcatctcccacatcaagatttcttcttc----tgagatttcta 461  Q
    |        |  ||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||| |||| || | ||||||    | |||| ||||    
T  14197420 taaaaaaatt--ggattctcaacttgtttttgcttacaaaatttaaagacagcttgagcatttcccacgtcaaaatgttttcttctaattaagatgtcta 14197517  T
Q  462 agatgattccagcaatcccgactagaaaaagcattatcttcaccctgaaacattgtagcaactttccctgtaggtactccttcttcatcaaacttctcaa 561  Q
    |||| ||||||||| |||  ||||||||||||||||||| |||| ||||||||||||||||||||||||| | ||| ||||| ||||||||| |||||||    
T  14197518 agat-attccagcagtccacactagaaaaagcattatctccaccatgaaacattgtagcaactttccctgcatgtattcctt-ttcatcaaa-ttctcaa 14197614  T
Q  562 cgaggtttttagttgct 578  Q
      ||||| |||||||||    
T  14197615 aaaggttattagttgct 14197631  T

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Target: chr1 (Bit Score: 86; Significance: 8e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 407 - 496
Target Start/End: Complemental strand, 6060236 - 6060147
Alignment:
Q  407 tttaaagacagcttgagcatctcccacatcaagatttcttcttctgagatttctaagatgattccagcaatcccgactagaaaaagcatt 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6060236 tttaaagacagcttgagcatctcccacatcaagatttcttcttctgagatttctaagatgattccagcaatcccgactagaaaaggcatt 6060147  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 530 - 581
Target Start/End: Complemental strand, 6060147 - 6060096
Alignment:
Q  530 tgtaggtactccttcttcatcaaacttctcaacgaggtttttagttgctgca 581  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6060147 tgtaggtactccttcttcatcaaacttctcaacgaggcttttagttgctgca 6060096  T

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Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 72 - 478
Target Start/End: Original strand, 23204691 - 23205097
Alignment:
Q  72 tcttgatctgttattattgacactggatatttaccacccattgcatctagccatgttctaaacaaccactcaaacgacctctgagtctcatcttgcaaca 171  Q
    ||||||||||| |||||||| ||  ||  ||| |||||||||||   |||||| |||  |||||||||   ||| ||| |||  || |||||||||||||    
T  23204691 tcttgatctgtaattattgatacatgactttttccacccattgccattagccaagtttcaaacaaccatgtaaaagacttctctgtttcatcttgcaaca 23204790  T
Q  172 aagcacatccaaataagatggattgaaaatgatgattcaatccggtgaagggtgcaaatggcatatcatacttgttggttttatatgttgtatcaaatgt 271  Q
    ||||||| || ||||| ||||| |||  ||||||||||||||| || || || ||||||||||||  |||||||||  | ||||||||||||||||||||    
T  23204791 aagcacaaccgaataaaatggactgatgatgatgattcaatccagtaaatggcgcaaatggcataagatacttgttcttcttatatgttgtatcaaatgt 23204890  T
Q  272 aacaacatcaccaaaaaattgatatgccaatcttgctcttccatccacccagaagaaatttatcattctatcttcatcatcgcattgtattgcatnnnnn 371  Q
    ||||||||| |||||| | | ||| ||||| || |  ||| |||| ||||| || ||||| ||||||||||| | || |||   ||| || ||||         
T  23204891 aacaacatctccaaaataattataggccaacctcgaccttgcatcaacccaaaaaaaattaatcattctatcatgattatcaacttgaatcgcataaaag 23204990  T
Q  372 nnnttaggattctcaacttgttttttcttgcaaaatttaaagacagcttgagcatctcccacatcaagatttcttcttctgagatttctaagatgattcc 471  Q
       || || |||||  ||||||||| ||| ||||| || || || |||||||||||||| ||||| |||||| |   || ||||| ||||||||||||||    
T  23204991 aaatttgggttctctgcttgtttttgcttacaaaagtttaacactgcttgagcatctccaacatccagatttttagatcggagatctctaagatgattcc 23205090  T
Q  472 agcaatc 478  Q
    | |||||    
T  23205091 aacaatc 23205097  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 268
Target Start/End: Complemental strand, 11326386 - 11326276
Alignment:
Q  158 ctcatcttgcaacaaagcacatccaaataagatggattgaaaatgatgattcaatccggtgaagggtgcaaatggcatatcatacttgttggttttatat 257  Q
    ||||||||| |  |||||||| |||||||| || |||||| |||||| |||||||||    || || ||||||||||||  ||||||||| || ||||||    
T  11326386 ctcatcttgtagtaaagcacaaccaaataaaattgattgataatgattattcaatccaacaaacggggcaaatggcatactatacttgttagtcttatat 11326287  T
Q  258 gttgtatcaaa 268  Q
    || || |||||    
T  11326286 gtggtgtcaaa 11326276  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 493
Target Start/End: Complemental strand, 11326136 - 11326051
Alignment:
Q  408 ttaaagacagcttgagcatctcccacatcaagatttcttcttctgagatttctaagatgattccagcaatcccgactagaaaaagc 493  Q
    ||||| ||||||||||||||||| || || | |||| ||||||  ||| |||||| ||||||||| ||||||| | |||| |||||    
T  11326136 ttaaaaacagcttgagcatctccaacgtctaaattttttcttcgaagacttctaacatgattccaacaatccctattagagaaagc 11326051  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 493
Target Start/End: Original strand, 13223891 - 13223976
Alignment:
Q  408 ttaaagacagcttgagcatctcccacatcaagatttcttcttctgagatttctaagatgattccagcaatcccgactagaaaaagc 493  Q
    ||||| ||||||||||||||||| || || | |||| ||||||  ||| |||||| ||||||||| ||||||| | |||| |||||    
T  13223891 ttaaaaacagcttgagcatctccaacgtctaaattttttcttcgaagacttctaacatgattccaacaatccctattagagaaagc 13223976  T

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