View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4346-Insertion-4 (Length: 536)
Name: NF4346-Insertion-4
Description: NF4346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4346-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 8 - 536
Target Start/End: Original strand, 38210389 - 38210917
Alignment:
| Q |
8 |
atcttaagatttgaggtcaaatttatccttataaaacgagtttgtgaactaattactcctatttataaatacatattcgtatcatcttttatttaatatg |
107 |
Q |
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| T |
38210389 |
atcttaagatttgaggtcaaatttatccttataaaacgagtttgtgaactaattactcctatttataaatacatattcatatcatcttttatttaatatg |
38210488 |
T |
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| Q |
108 |
agactctttaacattctcaaagactaacatgaacatctctataaagtggaacattttaaatttcaatcaaacttttatcacaactannnnnnnccgcata |
207 |
Q |
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| T |
38210489 |
agactctttaacattctcaaagactaacatgaacatctc--taaagtggaacattttaaatttcaatcaaacttttatcacaactatttttttccgcata |
38210586 |
T |
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| Q |
208 |
tttgaactggtgtgacatttcatatgtcataaccttaacatacatgaaaatgataatttagtctgtaaaagattataaatctctaacaacatttatcaga |
307 |
Q |
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| T |
38210587 |
tttgaactggtgtgacatttcatatgtcataaccttaacatacatgaaaatgataatttagtctgtaaaagattataaatctctaacaacatttatcaga |
38210686 |
T |
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| Q |
308 |
tggtatctgactagattctggtttagagac--aagtgtctcaacttgtttttgtcaaagactaaaaaatttagnnnnnnnnnnaggaacaacctgtgaag |
405 |
Q |
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| T |
38210687 |
tggtatctgactagattctggtttagagacttatgtgtctcaacttgtttttgtcaaagactaaaaaatttagttttttttttaggaacaacctgtgaag |
38210786 |
T |
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| Q |
406 |
ctacaacatgttaagatcaatgtgtttgtgtatcttgtgaaactacatgttaggaccaatgctaatttgttttttcaggaccaatgtgtttgtattttgt |
505 |
Q |
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| T |
38210787 |
ctacaacatgttaagatcaatgtgtttgtgtatcttgtgaaactgcatgttaggaccaatgctaatatgttttttcaggaccaatgtgtttgtattttgt |
38210886 |
T |
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| Q |
506 |
gaagctatctatatgttaacatgacccaaag |
536 |
Q |
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| T |
38210887 |
gaagctatctatatgttaacatgacccaaag |
38210917 |
T |
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