View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4346-Insertion-5 (Length: 530)

Name: NF4346-Insertion-5
Description: NF4346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4346-Insertion-5
NF4346-Insertion-5
[»] chr2 (3 HSPs)
chr2 (156-344)||(34094983-34095170)
chr2 (8-83)||(34095243-34095318)
chr2 (440-530)||(34094800-34094887)


Alignment Details
Target: chr2 (Bit Score: 155; Significance: 5e-82; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 156 - 344
Target Start/End: Complemental strand, 34095170 - 34094983
Alignment:
Q  156 aagtgaaaagagagaaagagaaaagtgttatgtggtgaaagtgttttgtgtgtttatatagnnnnnnngtgtgagggttttattttatgaaggaaaagga 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  34095170 aagtgaaaagagagaaagagaaaagtgttatgtggtgaaagtgttttgtgtgtttatatagaaaaaa-gtgtgagggttttattttatgaaggaaaagga 34095072  T
Q  256 aaatcagaatgtgttggtgaaaattggtgaaaggacattttggtatatgtgtgtaatgcttttggggggtcttattgttttgggaaccc 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  34095071 aaatcagaatgtgttggtgaaaattggtgaaaggacattttggtatatgtgtgtaatgcttttggagggtcttattgttttggggaccc 34094983  T

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Target: chr2; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 34095318 - 34095243
Alignment:
Q  8 gaagatcaaagtgttttttcatcaatgccgctatcctctgcttctctaactgttcaactcctacacctcttagtgg 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34095318 gaagatcaaagtgttttttcatcaatgccgctatcctctgcttctctaactgttcaactcctacacctcttagtgg 34095243  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 440 - 530
Target Start/End: Complemental strand, 34094887 - 34094800
Alignment:
Q  440 ataattttatttatcacatgtggacacactctctcttgttgctaatccttaattttaagatttgcattttggtttattttgtaggactata 530  Q
    ||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||    
T  34094887 ataattttatttatcacatgtggacacactctctcttgttt---atccttaattttaagatttgcattttggtttattttgtaggactata 34094800  T

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