View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4346_high_2 (Length: 536)
Name: NF4346_high_2
Description: NF4346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4346_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Original strand, 38090921 - 38091455
Alignment:
| Q |
1 |
caaggtggtggtgatattgttcatcaatggcaatatgttgctgataagatacatgatgggttgtttattagagttgttgttagtcctgcgaagagaaagg |
100 |
Q |
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| T |
38090921 |
caaggtggtggtgatattgttcatcaatggcaatatgttgctgataagatacatgatgggttgtttattagagttgttgttagtcctgcgaagagaaagg |
38091020 |
T |
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| Q |
101 |
ggaagaagacaattaaaactaagttgaatgctttgtttcttggtaatgcatatgagttgcttgatgtaatgaatgagagttttcctgaattgggcttgat |
200 |
Q |
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| T |
38091021 |
ggaagaagacaattaaggctaagtttaatgctttgtttcttggtaatgcatatgagttgcttgatgtgatgaatgagagttttcctgaattgggcttgat |
38091120 |
T |
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| Q |
201 |
tggtgaacaatgtattgaaatgagttggattgattcagtgttgttttggtataactatccggtagggactttgactgatattttacttgaaagacattca |
300 |
Q |
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| T |
38091121 |
tggtgaacaatgtattgaaatgagttggattgattcagtgttgttttggtataactatccggtagggactttgactgatattttacttgaaagacattca |
38091220 |
T |
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| Q |
301 |
tcaaaagagaaattcttgaagaggaaatcagattatgtgcagaagccgatttcgaaaattgggtttgatggtatatggaagaagatgattgaactaggaa |
400 |
Q |
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| T |
38091221 |
tcaaaagagaaattcttgaagaggaaatcagattatgtgcagaagccgatttcaaaaattgggtttgatggtatatggaagaagatgattgaactaggaa |
38091320 |
T |
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| Q |
401 |
aggtttcactcacattcaatccttatggtgggaaaatgagtgagatttctgagatggcaacaccattcccacatagagcaggtaacatatataaaattca |
500 |
Q |
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| T |
38091321 |
aggtttcactcacattcaatccttatggtgggaaaatgggtgagatttctgagatggcaacaccattcccacatagagcaggtaacatatataaaattca |
38091420 |
T |
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| Q |
501 |
gtattcagttaactggaaagaagaaagtaatgatg |
535 |
Q |
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| T |
38091421 |
gtattcagttaactggaaagaagaaagtaatgatg |
38091455 |
T |
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