View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4346_high_3 (Length: 446)
Name: NF4346_high_3
Description: NF4346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4346_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 10 - 427
Target Start/End: Original strand, 19856086 - 19856503
Alignment:
| Q |
10 |
agatgaacagaagccaaacccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacctcaaatcagatcccattatactcacatcct |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19856086 |
agatgaacagaagccaaacccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacctcaaatcagatcccattatactcacatcct |
19856185 |
T |
|
| Q |
110 |
cattcataaacctctctggcttaaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagcagttgtacctttcgg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19856186 |
cattcataaacctctctggcttaaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagcagttgtacctttcgg |
19856285 |
T |
|
| Q |
210 |
aatatgcttgtcaccaaccataacatcatgaacagctaaacgtgcccatgataaaagtggtcctggtggatgcactcttaatgcttccttcacaatgcat |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19856286 |
aatatgcttgtcaccaaccataacatcatgaacagctaaacgtgcccatgataaaagtggtcctggtggatgcactcttaatgcttccttcacaatgcac |
19856385 |
T |
|
| Q |
310 |
tgcaagtaacacattttttgaacatcagcatcattgataactttggaatttccaacaacacggtaaatttcttcttgtacttttgcttgtatctctggat |
409 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
19856386 |
tgtaagtaacacattttttgaacatcagcatcagtgataactttggaatttccaacaacacggtaaatttcttcttgtgcttttgcttgtatctctggat |
19856485 |
T |
|
| Q |
410 |
gaagcaccattctagcca |
427 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
19856486 |
gaagcaccatcctagcca |
19856503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 8748551 - 8748312
Alignment:
| Q |
10 |
agatgaacagaagccaaacccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacctcaaatcagatcccattatactcacatcct |
109 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
8748551 |
agatgaacagaagccaaatccatagcttttccaggacaaaccctcctaccagctccaaatg-tgctaacgtcaaatcagatcccattatactcacttcct |
8748453 |
T |
|
| Q |
110 |
cattcataaacctctctggctt--aaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagcagttgtacctttc |
207 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8748452 |
cattcataaacctctctggcttttaaactcttttgcctcattgcaaaccttctcatcatgtgttataacccacatattcaccatagcagttgtacctttc |
8748353 |
T |
|
| Q |
208 |
ggaatatgcttgtcaccaaccataacatcatgaacagctaa |
248 |
Q |
| |
|
|||| |||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
8748352 |
ggaacatgcttctcacctaccataacatcatgaacagctaa |
8748312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 35081140 - 35080901
Alignment:
| Q |
10 |
agatgaacagaagccaaacccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacctcaaatcagatcccattatactcacatcct |
109 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
35081140 |
agatgaacagaagccaaatccatagcttttccaggacaaaccctcctaccagctccaaatg-tgctaacgtcaaatcagatcccattatactcacttcct |
35081042 |
T |
|
| Q |
110 |
cattcataaacctctctggctt--aaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagcagttgtacctttc |
207 |
Q |
| |
|
||||||||||||||||| |||| |||||||| || ||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35081041 |
cattcataaacctctctcgcttttaaactcttttgcctcattgcaaaccttctcatcatgtgttataacccacatattcaccatagcagttgtacctttc |
35080942 |
T |
|
| Q |
208 |
ggaatatgcttgtcaccaaccataacatcatgaacagctaa |
248 |
Q |
| |
|
|||| |||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
35080941 |
ggaacatgcttctcacctaccataacatcatgaacagctaa |
35080901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 94 - 251
Target Start/End: Original strand, 39427880 - 39428039
Alignment:
| Q |
94 |
attatactcacatcctcattcataaacctctctggctt--aaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccat |
191 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||| || ||||| || |||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
39427880 |
attatactcacttcctcattcataaacctctctggcttttaaactcttttgcctcattgcaaaccttctcatcatgtgttatagcccatatattcaccat |
39427979 |
T |
|
| Q |
192 |
agcagttgtacctttcggaatatgcttgtcaccaaccataacatcatgaacagctaaacg |
251 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||| |||||||||||||||||| ||||||| |
|
|
| T |
39427980 |
agcagttgtacctttcggaacatgcttctcacctaccataacatcatgaacaactaaacg |
39428039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 163; Significance: 7e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 32830282 - 32830523
Alignment:
| Q |
10 |
agatgaacagaagccaaacccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacctcaaatcagatcccattatactcacatcct |
109 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||| |||| |
|
|
| T |
32830282 |
agatgaacaaaagccaaatccatagcttttccaggacaaaccctcctaccagctccaaatggtgctaacgtcaaatcatatcccattgtactcacttcct |
32830381 |
T |
|
| Q |
110 |
cattcataaacctctctggc--ttaaactcttctggttcattccacaccttctcatcatgtgttatggcccacatattcaccatagcagttgtacctttc |
207 |
Q |
| |
|
|||||||||||||||||||| |||||||||| || ||||| | |||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
32830382 |
cattcataaacctctctggcttttaaactcttttgcctcattgtaaaccttctcatcatgtgttatagcccacatattcaccataccagttgtacctttc |
32830481 |
T |
|
| Q |
208 |
ggaatatgcttgtcaccaaccataacatcatgaacagctaaa |
249 |
Q |
| |
|
|||| |||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
32830482 |
ggaacatgcttctcacctaccataacatcatgaacagctaaa |
32830523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University