View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4346_high_8 (Length: 244)
Name: NF4346_high_8
Description: NF4346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4346_high_8 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 26 - 220
Target Start/End: Complemental strand, 31172208 - 31172014
Alignment:
| Q |
26 |
ttgtttcttataatttactgtcttttaccttccggtcttctatttttgcatgatcatatatgtttagacgtttgtttcatttcatattgattctatcaat |
125 |
Q |
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| T |
31172208 |
ttgtttcttataatttactatcttttaccttcccgtcttctatttttccatgatcatatatgtttagacgtttgtttcatttcatattgattctatcaat |
31172109 |
T |
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| Q |
126 |
tacaactcataattttttatgtgtttgaacacttgtttcagttcaaattcaattatattgaatttttatctgagacttgcttaggatatttgaat |
220 |
Q |
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| T |
31172108 |
tacaactcataattttttatgtgtttgaacacttgtttcaattcaaattcaattatattgaatttttatctgagacctgcttaggatatttgaat |
31172014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 61 - 189
Target Start/End: Original strand, 21655562 - 21655693
Alignment:
| Q |
61 |
tcttctatttttgcatgatcatatatgtttagacgtttgtttcatttcatattgattctatcaattacaactc---ataattttttatgtgtttgaacac |
157 |
Q |
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| T |
21655562 |
tcttatatttttccatgatcatatatgtttgaacacttgtttcatttcatattgattctatcgataacaattcataataatttcatatatgtttgaacgc |
21655661 |
T |
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| Q |
158 |
ttgtttcagttcaaattcaattatattgaatt |
189 |
Q |
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| T |
21655662 |
ttgtttcaattcaaacccgattataatgaatt |
21655693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 148025 - 148081
Alignment:
| Q |
63 |
ttctatttttgcatgatcatatatgtttagacgtttgtttcatttcatattgattct |
119 |
Q |
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| T |
148025 |
ttctatttttccatgatcatatatgtttggacgcttgtttcatttcatattgattct |
148081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 13658264 - 13658320
Alignment:
| Q |
63 |
ttctatttttgcatgatcatatatgtttagacgtttgtttcatttcatattgattct |
119 |
Q |
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| T |
13658264 |
ttctatttttccatgatcatatatgtttggacgcttgtttcatttcatattgattct |
13658320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 189
Target Start/End: Original strand, 39323339 - 39323503
Alignment:
| Q |
28 |
gtttcttataatttactgtcttttaccttccggtcttctatttttgcatgatcatatatgtttagacgtttgtttcatttcatattgattctatcaatta |
127 |
Q |
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| T |
39323339 |
gtttcttatgatttaatatctttttccttttactcttctatttttcaatgatcatatatgtttgaacgcttatttcatttcataacgattctatcgatcg |
39323438 |
T |
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| Q |
128 |
caactc---ataattttttatgtgtttgaacacttgtttcagttcaaattcaattatattgaatt |
189 |
Q |
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| T |
39323439 |
taattcgtaataatttcgtatgtgtttgaacacttgtttcaattcaaatcttattatattgaatt |
39323503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 34102613 - 34102527
Alignment:
| Q |
69 |
ttttgcatgatcatatatgtttagacgtttgtttcatttcatattgattctatcaattacaactcataattttttatgtgtttgaac |
155 |
Q |
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| T |
34102613 |
ttttgtatgatcatatatgtttaaactcttgttttgattcgtattgattctatcaattccaattcataattgtgtatgtgtttgaac |
34102527 |
T |
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