View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4346_low_11 (Length: 242)
Name: NF4346_low_11
Description: NF4346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4346_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 232
Target Start/End: Complemental strand, 6497138 - 6496923
Alignment:
| Q |
18 |
tttggaacctgcatttcatatggatagcagaaaccttcaagatatgaaatcatggggtcatagttcagctcaagaatcagtcaatgggtcttcaaataca |
117 |
Q |
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| T |
6497138 |
tttggaacctgcatttcatatggatagcagaaaccttcaagatatgaaatcatggggtcatagttcagctcaagaatcagtcaatgggtcttcaaataca |
6497039 |
T |
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| Q |
118 |
gagctgtatcctcggtagttgttggattaatttcagtcatattcatgtaa-atacatgagcatgtttcatcttcatgtatgtaacacataaagatatagt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6497038 |
gagctgtatcctcggtagttgttggattaatttcagtcatattcatgtaatatacatgagcatgtttcatcttcatgtatgtaacacataaagatatagt |
6496939 |
T |
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| Q |
217 |
catcaattgagtatta |
232 |
Q |
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|||||||||||||||| |
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| T |
6496938 |
catcaattgagtatta |
6496923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 6514461 - 6514384
Alignment:
| Q |
54 |
tcaagatatgaaatcatggggtcatagttcagctcaagaatcagtcaatgggtcttcaaatacagagctgtatcctcg |
131 |
Q |
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||||||||||||||| | ||||||||||| ||||||||||||||||||||| ||||||||||| |||| | |||||| |
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| T |
6514461 |
tcaagatatgaaatcgtcaggtcatagttctgctcaagaatcagtcaatggggcttcaaatacacagctatttcctcg |
6514384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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