View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4346_low_13 (Length: 216)
Name: NF4346_low_13
Description: NF4346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4346_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 10797303 - 10797505
Alignment:
| Q |
1 |
tttcgcttcaaatgatatcttttcgactgtctctggcaacccgactcctccaactatactatagttatatcccaagtttgcttcatcaattgcatcaatt |
100 |
Q |
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| T |
10797303 |
tttcgcttcaaatgatatcttttcgactgtctctggcaacccgactcctccaactatactatagttatatcccaagtttgcttcatcaattgcatcaatt |
10797402 |
T |
|
| Q |
101 |
tggtgcaacacatacaaggtttgtcctcctgcagacatatatgtttggttaatcaataacatnnnnnnncatacggtac-ttttgtatagaaaatgtgtt |
199 |
Q |
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| T |
10797403 |
tggtgcaacacatacaaggtttgtcctcctgcagacatatatg-ttgcttcatcaataacataaaaaaacatatgatacattttgtatagaaaatgtgtt |
10797501 |
T |
|
| Q |
200 |
tact |
203 |
Q |
| |
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|||| |
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|
| T |
10797502 |
tact |
10797505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 50078893 - 50079095
Alignment:
| Q |
1 |
tttcgcttcaaatgatatcttttcgactgtctctggcaacccgactcctccaactatactatagttatatcccaagtttgcttcatcaattgcatcaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50078893 |
tttcgcttcaaatgatatcttttcgactgtctctggcaacccgactcctccaactatactatagttatatcccaagtttgcttcatcaattgcatcaatt |
50078992 |
T |
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| Q |
101 |
tggtgcaacacatacaaggtttgtcctcctgcagacatatatgtttggttaatcaataacatnnnnnnncatacggtac-ttttgtatagaaaatgtgtt |
199 |
Q |
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| T |
50078993 |
tggtgcaacacatacaaggtttgtcctcctgcagacatatatg-ttgcttcatcaataacataaaaaaacatatgatacattttgtatagaaaatgtgtt |
50079091 |
T |
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| Q |
200 |
tact |
203 |
Q |
| |
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|||| |
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|
| T |
50079092 |
tact |
50079095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 50070490 - 50070557
Alignment:
| Q |
1 |
tttcgcttcaaatgatatcttttcgactgtctctggcaacccgactcctccaactatactatagttat |
68 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50070490 |
tttcgcttcaaatgatatcttttcgactgtctctggcaacccgactcctccaactatactatagttat |
50070557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 50070604 - 50070637
Alignment:
| Q |
93 |
catcaatttggtgcaacacatacaaggtttgtcc |
126 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
50070604 |
catcaatttggtgcaacacatacaaggtttgtcc |
50070637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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