View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4346_low_3 (Length: 507)
Name: NF4346_low_3
Description: NF4346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4346_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 13 - 489
Target Start/End: Complemental strand, 51912907 - 51912433
Alignment:
| Q |
13 |
acatcatcaaagttaacaatacttccttctcaattattactaattaccggttatttccaaatgtcttattccaaacgttattgagcttgaatgaccacta |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51912907 |
acatcatcaaagttaacaatacttccttctcaattattactaattaccggttatttccaaatgtcttattccaaacgttattgagcttgaatgaccacta |
51912808 |
T |
|
| Q |
113 |
attggtgtaccgaatgaagagtcatttcccgtgtgtcctgcctgtgctctgtgctctgtgtgtgtcagttatgcagaaagnnnnnnnnnggcagctcaca |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
51912807 |
attggtgtaccgaatgaagagtcatttcccgtgtgtcctgcctgtgctctgtgctctgtgtgtgtcagttatgcagaaa--aaaaaaaaggcagctcaca |
51912710 |
T |
|
| Q |
213 |
ctcactcacacccctcacttattttcctgccgtgcacccaatttgattatttcatcgatcatcaaatttcatgtaggaccactaagattgaaaacttgag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51912709 |
ctcactcacacccctcacttattttcctgccgtgcacccaatttgattatttcatcgatcatcaaatttcatgtaggaccactaagattgaaaacttgag |
51912610 |
T |
|
| Q |
313 |
gtgaaaataattaataagacaaaaaacaagacacnnnnnnnnnnnnnnnnnnggcagataaaaacactattcttatcatgattttaggaaactagcagaa |
412 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51912609 |
gtgaaaataattaataagacaaaaaacaagacacttttttcttttctcttttggcagataaaaacactattcttatcatgattttaggaaactagcagaa |
51912510 |
T |
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| Q |
413 |
ctcacgatctgtcatacaactcaacagcctttagcaatcaaagtctgtgaaatcaaacactaaaagcaaggtgattc |
489 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51912509 |
ctcacgatctgtcatacaactcaacagcctttagcaatcaaagtctgtgaaatcaaacactaaaagcaaggtgattc |
51912433 |
T |
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