View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4346_low_5 (Length: 443)
Name: NF4346_low_5
Description: NF4346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4346_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 14 - 401
Target Start/End: Complemental strand, 10797337 - 10796950
Alignment:
| Q |
14 |
cagagacagttgaaaagatatcatttgaagcgaaattggttgaaggcccaaatggagggtctattggaaagacgacagttaaataccaaaccaaaggaga |
113 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10797337 |
cagagacagtcgaaaagatatcatttgaagcgaaattggttgaaggctcaaatggagggtctgttggaaagacgacagttaaataccaaaccaaaggaga |
10797238 |
T |
|
| Q |
114 |
tgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaac |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10797237 |
tgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggggatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaac |
10797138 |
T |
|
| Q |
214 |
taatccatcctccaatttaccaagtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaataaagttttttcttgtcagtttcttttcttact |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10797137 |
taatccatcctccaatttaccaagtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaataaagttttttcttgtcagtttcttttcttact |
10797038 |
T |
|
| Q |
314 |
tttgaactgggagatttgtgatgtttatgttgtatctcacttcatcaatgaataaattaatacaaatgaaatcactatccaagtaata |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10797037 |
tttgaactgggagatttgtgatgtttatgttgtatctcacttcatcaatgaataaattaatacaaatgaaatcactatccaaataata |
10796950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 436
Target Start/End: Complemental strand, 10796403 - 10796360
Alignment:
| Q |
393 |
caagtaatagagaattttgtagcataaaagaatcacaggttctg |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10796403 |
caagtaatagagaattttgtagcataaaagaatcacaagttctg |
10796360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 14 - 401
Target Start/End: Complemental strand, 50078927 - 50078540
Alignment:
| Q |
14 |
cagagacagttgaaaagatatcatttgaagcgaaattggttgaaggcccaaatggagggtctattggaaagacgacagttaaataccaaaccaaaggaga |
113 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50078927 |
cagagacagtcgaaaagatatcatttgaagcgaaattggttgaaggctcaaatggagggtctgttggaaagacgacagttaaataccaaaccaaaggaga |
50078828 |
T |
|
| Q |
114 |
tgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaac |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50078827 |
tgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggggatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaac |
50078728 |
T |
|
| Q |
214 |
taatccatcctccaatttaccaagtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaataaagttttttcttgtcagtttcttttcttact |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50078727 |
taatccatcctccaatttaccaagtgcttgctagttgtttttgtgtcttcttaatcttccaatgtaataaagttttttcttgtcagtttcttttcttact |
50078628 |
T |
|
| Q |
314 |
tttgaactgggagatttgtgatgtttatgttgtatctcacttcatcaatgaataaattaatacaaatgaaatcactatccaagtaata |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
50078627 |
tttgaactgggagatttgtgatgtttatgttgtatctcacttcatcaatgaataaattaatacaaatgaaatcactatccaaataata |
50078540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 238
Target Start/End: Complemental strand, 50070524 - 50070300
Alignment:
| Q |
14 |
cagagacagttgaaaagatatcatttgaagcgaaattggttgaaggcccaaatggagggtctattggaaagacgacagttaaataccaaaccaaaggaga |
113 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
50070524 |
cagagacagtcgaaaagatatcatttgaagcgaaattggttgaaggctcaaatggagggtctattggaaagacgaccgttaaataccaaaccaaaggaga |
50070425 |
T |
|
| Q |
114 |
tgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaac |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50070424 |
tgctaagccaattgaaaaggaggttgaggaaggcaaagccaagggggatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaac |
50070325 |
T |
|
| Q |
214 |
taatccatcctccaatttaccaagt |
238 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
50070324 |
taatccatcctccaatttaccaagt |
50070300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 393 - 436
Target Start/End: Complemental strand, 50077993 - 50077950
Alignment:
| Q |
393 |
caagtaatagagaattttgtagcataaaagaatcacaggttctg |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
50077993 |
caagtaatagagaattttgtagcataaaagaatcacaagttctg |
50077950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 429
Target Start/End: Original strand, 50112144 - 50112180
Alignment:
| Q |
393 |
caagtaatagagaattttgtagcataaaagaatcaca |
429 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
50112144 |
caagtaaaagagaattttgtagcataaaagaatcaca |
50112180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 281
Target Start/End: Complemental strand, 50070016 - 50069988
Alignment:
| Q |
253 |
tttgtgtcttcttaatcttccaatgtaat |
281 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
50070016 |
tttgtgtcttcttaatcttccaatgtaat |
50069988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 13501504 - 13501575
Alignment:
| Q |
145 |
ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaactaa |
216 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||| |||||||||| |||||| |||||| ||||||||||| |
|
|
| T |
13501504 |
ggcaaagctaagggtgatggtcttttcaaggcccttgagggttactgtttggctaatcctgattacaactaa |
13501575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 13515307 - 13515378
Alignment:
| Q |
145 |
ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattacaactaa |
216 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| || |||||||| |||||| |||||| ||||||||||| |
|
|
| T |
13515307 |
ggcaaagctaagggtgatggtcttttcaaggctatagagggttactgtttggctaatcctgattacaactaa |
13515378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 13541874 - 13541914
Alignment:
| Q |
170 |
tcaaggccattgagggttatgttttggccaatcctaattac |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
13541874 |
tcaaggccattgagggttatgttttggcaaaccctaattac |
13541914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 13485788 - 13485853
Alignment:
| Q |
145 |
ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattac |
210 |
Q |
| |
|
|||||||| | |||||||| |||||||||||| |||| ||||| |||||||| |||||| ||||| |
|
|
| T |
13485788 |
ggcaaagctaggggtgatggtcttttcaaggctcttgaaggttacgttttggcaaatcctgattac |
13485853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 13509549 - 13509614
Alignment:
| Q |
145 |
ggcaaagccaagggtgatgctcttttcaaggccattgagggttatgttttggccaatcctaattac |
210 |
Q |
| |
|
|||||||| | |||||||| ||||||||| || |||| |||||||||||||| |||||| ||||| |
|
|
| T |
13509549 |
ggcaaagctaggggtgatggtcttttcaaagctcttgaaggttatgttttggcaaatcctgattac |
13509614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University