View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4346_low_6 (Length: 424)
Name: NF4346_low_6
Description: NF4346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4346_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 22 - 412
Target Start/End: Complemental strand, 37504248 - 37503858
Alignment:
| Q |
22 |
caacgatcggtgatagattccattacagtcttcaaatacggaaaagacgaaggactcgttgatgggacagagtgttctgtttgtctaggtgaatttcaag |
121 |
Q |
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| T |
37504248 |
caacgatcggtgatagattccattacagtcttcaaatacagaaaagacgaaggactcgttgatgggacagagtgttctgtttgtctaggtgaatttcaag |
37504149 |
T |
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| Q |
122 |
aggaagagagtctcagaattttgcctaagtgtagccacgcttttcatatcccttgtattgatacttggcttagttcacacaagaattgtccgctgtgtcg |
221 |
Q |
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| T |
37504148 |
aggaagagagtctcagaattttgcctaagtgtagccacgcttttcatatcccttgtattgatacttggcttagttcacacaagaattgtccgctgtgtcg |
37504049 |
T |
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| Q |
222 |
tgcacctgtgatcaatgatgctgcagaggtgagtatcacagtcactgatcaacttgattcaatttcaaatatttctgttgagactcagaatcaaggacat |
321 |
Q |
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| T |
37504048 |
tgcacctgttatcaatgatgctgcagaggtgagtatcacagtcactgatcaacttgattcaatttcaaatatttctggtgacactcagaatcaaggacat |
37503949 |
T |
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| Q |
322 |
acagaaagctctgataatgctgttgggagaggattagggtcacataatgtaggagagtttgatattattattagagtagataatgatgatg |
412 |
Q |
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| T |
37503948 |
acagaaagctctgataatgctgttgggagaggattagggtcacataatgtaggagagtttgatattattattagagtagataatgatgatg |
37503858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 193
Target Start/End: Complemental strand, 27771725 - 27771620
Alignment:
| Q |
88 |
acagagtgttctgtttgtctaggtgaatttcaagaggaagagagtctcagaattttgcctaagtgtagccacgcttttcatatcccttgtattgatactt |
187 |
Q |
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| T |
27771725 |
acagattgttcagtttgtctaagtgagtttcaagatgatgaaagtgttagacttttaccaatgtgtaaccatgtttttcatcttccttgtattgatacat |
27771626 |
T |
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| Q |
188 |
ggctta |
193 |
Q |
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|||||| |
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| T |
27771625 |
ggctta |
27771620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 202
Target Start/End: Complemental strand, 37227974 - 37227852
Alignment:
| Q |
80 |
ttgatgggacagagtgttctgtttgtctaggtgaatttcaagaggaagagagtctcagaattttgcctaagtgtagccacgcttttcatatcccttgtat |
179 |
Q |
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| T |
37227974 |
ttgatggatcagattgttctgtttgtttgagtgagtttgaagaagatgagaatcttagacttttgccaaagtgtaaccatgcttttcatttaccttgtat |
37227875 |
T |
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| Q |
180 |
tgatacttggcttagttcacaca |
202 |
Q |
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| T |
37227874 |
tgatacttggcttagatcacaca |
37227852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 79 - 191
Target Start/End: Complemental strand, 12617931 - 12617819
Alignment:
| Q |
79 |
gttgatgggacagagtgttctgtttgtctaggtgaatttcaagaggaagagagtctcagaattttgcctaagtgtagccacgcttttcatatcccttgta |
178 |
Q |
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||||||| ||||| ||||||||||||||| || |||||||| || |||||| | ||| |||| ||||| |||||||| ||||||||| | ||||||| |
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| T |
12617931 |
gttgatgtaacagattgttctgtttgtctaaacgagtttcaagacgatgagagtattagacttttacctaaatgtagccatgcttttcatcttccttgta |
12617832 |
T |
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| Q |
179 |
ttgatacttggct |
191 |
Q |
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| T |
12617831 |
ttgatacatggct |
12617819 |
T |
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