View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4346_low_7 (Length: 352)
Name: NF4346_low_7
Description: NF4346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4346_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 325
Target Start/End: Complemental strand, 34095636 - 34095324
Alignment:
| Q |
13 |
gaagatttggcattgaagagagctctttagaaggctcaaaagggtttctactactacaaagtagtgaaccagatccatagttaccgccaccaacaacaac |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34095636 |
gaagatttggcattgaagagagctctttagaaggctcaaaagggtttctactactacaaagtagtgaaccagatccatagttaccaccaccaacaacaac |
34095537 |
T |
|
| Q |
113 |
cctgttgttaatgttattctgattctgattgtgattgttaggcacaatccatccagcaccaacgttagaaccaacaaaaggaacataaccagaaccaacc |
212 |
Q |
| |
|
|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34095536 |
cctgtttttaatgttattctgattctgattctgattgttaggcacaatccatccagcaccaacgttagaaccaacaaaaggaacataaccagaaccaacc |
34095437 |
T |
|
| Q |
213 |
aaaacagtgttattattgttgttggtggtgttttcattcatcatcatttgttgttgaggaaactgaaatggcccagttggtgaaaatgcaccatacttca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34095436 |
aaaacagtgttattattgttgttggtggtgttttcattcatcatcatttgttgttgaggaaactgaaatggcccagttggtgaaaatgcaccatacttca |
34095337 |
T |
|
| Q |
313 |
aaacctgttgttg |
325 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34095336 |
aaacctgttgttg |
34095324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 314
Target Start/End: Original strand, 12294560 - 12294624
Alignment:
| Q |
250 |
tcatcatcatttgttgttgaggaaactgaaatggcccagttggtgaaaatgcaccatacttcaaa |
314 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| | || ||| ||| |||||||||||| ||||| |
|
|
| T |
12294560 |
tcatcatcacttgttgttgaggaaactgaaatgacacatttgatgataatgcaccatacctcaaa |
12294624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University