View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4346_low_9 (Length: 264)
Name: NF4346_low_9
Description: NF4346
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4346_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 254
Target Start/End: Complemental strand, 2430968 - 2430733
Alignment:
| Q |
19 |
aaggatcacaagacaagtacagattttttagcagaacaacatcatttgaaccttgtggaagcttgagagttatggtactgtctacaatattcatgtctga |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2430968 |
aaggatcacaagacaagtacagattttttagcagaacaacatcatttgaaccttgtggaagcttgagagttatagtactgtctacaatattcatgtctga |
2430869 |
T |
|
| Q |
119 |
ttctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcatttccgccatctcaggaattgtgttgcaaaaatctttgtggtgtttg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2430868 |
ttctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcatttccgccatctcaggaattgtgttgcaaaaatctttgtggtgtttg |
2430769 |
T |
|
| Q |
219 |
tgttgtacatgtacacatctaatacaactggccaca |
254 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2430768 |
tgttgtacatgtacacatctaatacaactggccaca |
2430733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 228
Target Start/End: Complemental strand, 2434548 - 2434339
Alignment:
| Q |
19 |
aaggatcacaagacaagtacagattttttagcagaacaacatcatttgaaccttgtggaagcttgagagttatggtactgtctacaatattcatgtctga |
118 |
Q |
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|||||||||||||||||||||||||||| |||| ||| |||||||| |||||||||||||||||||| |||||||||||||| ||||| || | |||||| |
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| T |
2434548 |
aaggatcacaagacaagtacagatttttgagcaaaaccacatcattggaaccttgtggaagcttgagtgttatggtactgtcaacaatgttgaggtctga |
2434449 |
T |
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| Q |
119 |
ttctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcatttccgccatctcaggaattgtgttgcaaaaatctttgtggtgtttg |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
2434448 |
ttctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcacttccgccatctcaggaattgtgtcactaaaatctttgtggtgtttg |
2434349 |
T |
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| Q |
219 |
tgttgtacat |
228 |
Q |
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|||||||||| |
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| T |
2434348 |
tgttgtacat |
2434339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 2519222 - 2519370
Alignment:
| Q |
19 |
aaggatcacaagacaagtacagattttttagcagaacaacatcatttgaaccttgtggaagcttgagagttatggtactgtctacaatattcatgtctga |
118 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||| ||||||||| ||| ||||||||||||||||||||||||||||||| | || ||||||||||| |
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| T |
2519222 |
aaggatcacaagacaagtagagatttttgagcagaagaacatcattggaagcttgtggaagcttgagagttatggtactgtcaatgatgttcatgtctga |
2519321 |
T |
|
| Q |
119 |
ttctttaggaaaaccagacacatagtccttcagaatcacttgcttgttc |
167 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
2519322 |
ttctttaggaaaaccagacacatagtgtttcagaattacttgcttgttc |
2519370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 1458007 - 1457834
Alignment:
| Q |
19 |
aaggatcacaagacaagtacagattttttagcagaacaacatcatttgaaccttgtggaagcttgagagttatggtactgtctacaatattcatgtctga |
118 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||||||||||||||| |||||||||||||| |||||| | || ||||| || |||| |||||||||||| |
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| T |
1458007 |
aaggatcacaggataagtagagattttttagcagaacaacatcattggaaccttgtggaaggttgagaataattgtactatcaacaacattcatgtctga |
1457908 |
T |
|
| Q |
119 |
ttctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcatttccgccatctcaggaattg |
192 |
Q |
| |
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||| ||||||||||||||||||||||| ||| ||||||||||||||| |||| || |||||| | |||||||| |
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| T |
1457907 |
ttccttaggaaaaccagacacatagtctctcaaaatcacttgcttgtttctcacttgcgccatgttaggaattg |
1457834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 2427714 - 2427541
Alignment:
| Q |
19 |
aaggatcacaagacaagtacagattttttagcagaacaacatcatttgaaccttgtggaagcttgagagttatggtactgtctacaatattcatgtctga |
118 |
Q |
| |
|
|||||||||| || ||||| |||||||| ||||||||||||||||| |||||||||||||| |||||| | || ||||| || |||| |||||||||||| |
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| T |
2427714 |
aaggatcacaggataagtagagatttttgagcagaacaacatcattggaaccttgtggaaggttgagaataattgtactatcaacaacattcatgtctga |
2427615 |
T |
|
| Q |
119 |
ttctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctcatttccgccatctcaggaattg |
192 |
Q |
| |
|
||| ||||||||||||||||||||||| ||| ||||||||||||||| |||| || |||||| | |||||||| |
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| T |
2427614 |
ttccttaggaaaaccagacacatagtctctcaaaatcacttgcttgtttctcacttgcgccatgttaggaattg |
2427541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 21 - 171
Target Start/End: Original strand, 2498890 - 2499037
Alignment:
| Q |
21 |
ggatcacaagacaagtacagattttttagcagaacaacatcatttgaaccttgtggaagcttgagagttatggtactgtctacaatattcatgtctgatt |
120 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||| ||||| ||||||||||||||||| ||||| || |||| || | ||| ||||||||||||| |
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| T |
2498890 |
ggatcacaagacaagtataaattttttagcagaaca---tcattggaaccttgtggaagcttaagagtaattatactttcaataatgttcatgtctgatt |
2498986 |
T |
|
| Q |
121 |
ctttaggaaaaccagacacatagtccttcagaatcacttgcttgttcctca |
171 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2498987 |
ctttaggaaaaccagatacatagtccttcagaatcacttgcttgttcctca |
2499037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 2507420 - 2507568
Alignment:
| Q |
19 |
aaggatcacaagacaagtacagattttttagcagaacaacatcatttgaaccttgtggaagcttgagagttatggtactgtctacaatattcatgtctga |
118 |
Q |
| |
|
||||||||||||||||||| |||||||| | || ||| |||||| ||||||| ||||||||| ||| |||| ||||| || ||||| || | |||||| |
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| T |
2507420 |
aaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatcaacaatgttgaggtctga |
2507519 |
T |
|
| Q |
119 |
ttctttaggaaaaccagacacatagtccttcagaatcacttgcttgttc |
167 |
Q |
| |
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|||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
2507520 |
ttctttaggaaaaccagacacatagtgtttcagaagcacttgcttgttc |
2507568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 2514510 - 2514658
Alignment:
| Q |
19 |
aaggatcacaagacaagtacagattttttagcagaacaacatcatttgaaccttgtggaagcttgagagttatggtactgtctacaatattcatgtctga |
118 |
Q |
| |
|
||||||||||||||||||| |||||||| | || ||| |||||| ||||||| ||||||||| ||| |||| ||||| || ||||| || | |||||| |
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| T |
2514510 |
aaggatcacaagacaagtaaagatttttaaccaatacagtatcattggaaccttctggaagcttaagatttatagtactatcaacaatgttgaggtctga |
2514609 |
T |
|
| Q |
119 |
ttctttaggaaaaccagacacatagtccttcagaatcacttgcttgttc |
167 |
Q |
| |
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|||||||||||||||||||||||| | ||||||| |||||||| |||| |
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|
| T |
2514610 |
ttctttaggaaaaccagacacataatgtttcagaagcacttgctggttc |
2514658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 11845984 - 11845932
Alignment:
| Q |
69 |
ccttgtggaagcttgagagttatggtactgtctacaatattcatgtctgattc |
121 |
Q |
| |
|
|||||||||| |||| |||||||||||||| ||||| |||||||||||||| |
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|
| T |
11845984 |
ccttgtggaattttgaatgttatggtactgtcaacaatgttcatgtctgattc |
11845932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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