View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4347-Insertion-1 (Length: 1100)
Name: NF4347-Insertion-1
Description: NF4347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4347-Insertion-1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 811; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 811; E-Value: 0
Query Start/End: Original strand, 8 - 887
Target Start/End: Complemental strand, 5482364 - 5481485
Alignment:
| Q |
8 |
acttccactcacattctttgatcttctatggttaagatttccaccagttgaacgtcttttcttctatgaattcacaaactcacccacttttttctatgaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5482364 |
acttccactcacattctttgatcttctatggttaagatttccaccagttgaacgtcttttcttctatgaattcacaaactcacccacttttttctatgaa |
5482265 |
T |
|
| Q |
108 |
actcttcttccaaatctcaaacactcactttcactcacacttcaacactttctccctcttgctggtaacataatttggcctactgattcatccaaaccaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
5482264 |
actcttcttccaaatctcaaacactcactttcactcacacttcaacactttctccctcttgctggtaacataatttggcctagtgattcatccaaaccaa |
5482165 |
T |
|
| Q |
208 |
tcataaactatgttaagggagattctatttccttcaatgttgttgagtccaaagaaagtttcaaagatctttcttctaatcaatgtgaagcttcaaaaag |
307 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
5482164 |
tcataaactatgttaagggagattttgtttccttcaatgttgttgagtccaaagaaagtttcaaaaatctttcttctaatcaatgtgaagctttaaaaag |
5482065 |
T |
|
| Q |
308 |
gcatcatttgataccccttttgaaaacttcacatgaaaaagcttctttgatttcaatacaaatcactttgtttccaaacaatggtttttgcattggaata |
407 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5482064 |
gcatcatttgataccccttttgaacacttcacatgaaaaagcttctttgatttcaatacaaatcactttgtttccaaacaatggtttttgcattggaata |
5481965 |
T |
|
| Q |
408 |
tcatcacaccatgctgctttagatggaaaatcttccaccacttttatgaaatcatggtcctatattgcatgttctaattctaaccttgattcatcttttt |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5481964 |
tcatcacaccatgctgctttagatggaaaatcttccaccacttttatgaaatcatggtcctatattgcatgctctaattctaaccttgattcatcttttt |
5481865 |
T |
|
| Q |
508 |
tatctttacctgaaaacctaaccccnnnnnnngatagatcattgatagaagatcatcatagtggaattgaaattagtgaagcatatgttgacgctttgat |
607 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5481864 |
tatctttacctgaaaacctaacccctttttttgatagatcattgatagaagatcatcatagtggaattgaaattagtgaagcatatgttgatgctttgat |
5481765 |
T |
|
| Q |
608 |
gaaacttggtggaccaaataataaaagtctcaaggtttgggattttttcggtgccgcgaaaaacgatgcaattaaaagcttatttgaattgactccttca |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5481764 |
gaaacttggtggaccaaataataaaagtctcaaggtttgggattttttcggtgccgcgaaaaacgatgcaattaaaagcttatttgaattgactccttca |
5481665 |
T |
|
| Q |
708 |
aatattcaaaagcttaaagattatgcaaaaaatgaaatgaaaatgaatgttacaaacttgtcaactttttcagttacatgtgcttatgtgttagcatgtt |
807 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5481664 |
aatattcaaaagcttaaagattatgcaaaaaatgaaatgaaaatgaatgttacaaacttgtctactttttcagttacatgtgcttatgtgctagcatgtt |
5481565 |
T |
|
| Q |
808 |
tagcaaaagctgagcaacctaaggttgaagaagtggttttcatatttagtgtggattctcgagctagattagagccttca |
887 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5481564 |
tagcaaaagctgagcaacctaaggctgaagaagtggttttcatatttagtgtggattctagagctagattagagccttca |
5481485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 8 - 854
Target Start/End: Original strand, 5524766 - 5525606
Alignment:
| Q |
8 |
acttccactcacattctttgatcttctatggttaagatttccaccagttgaacgtcttttcttctatgaattcacaaactcacccacttttttctatgaa |
107 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||| | ||||||||||||||| |
|
|
| T |
5524766 |
acttccactcactttctttgatcttttatggttaagatttccaccagttgaacgtctcttcttctatgaactcacaaactcgacaacttttttctatgaa |
5524865 |
T |
|
| Q |
108 |
actcttcttccaaatctcaaacactcactttcactcacacttcaacactttctccctcttgctggtaacataatttggcctactgattcatccaaaccaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
5524866 |
actcttcttccaaatctcaaacactcactttcactcacacttcaacactttctccctcttgttggtaacataacttggcctagtgattcatccaaaccaa |
5524965 |
T |
|
| Q |
208 |
tcataaactatgttaagggagattctatttccttcaatgttgttgagtccaaagaaagtttcaaagatctttcttctaatcaatgtgaagcttcaaaaag |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
5524966 |
tcataaactatgttaagggagattctatttctttcaatgttgttgagtccaaagcaagtttcaaagatctttcttctcatcattgtgaagcttcaaaaag |
5525065 |
T |
|
| Q |
308 |
gcatcatttgataccccttttgaaaacttcacatgaaaaagcttctttgatttcaatacaaatcactttgtttccaaacaatggtttttgcattggaata |
407 |
Q |
| |
|
||||||||||||||||| ||||||| ||| |||||||| ||||||||| || |||||||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5525066 |
acatcatttgatacccctattgaaaaattctcatgaaaaggcttctttgcttgcaatacaagttactttgtttccaaacaatggtttttgcattggaata |
5525165 |
T |
|
| Q |
408 |
tcatcacaccatgctgctttagatggaaaatcttccaccacttttatgaaatcatggtcctatattgcatgttctaattctaaccttgattcatcttttt |
507 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
5525166 |
acaacacaccatgctgctttagatggaaaatcttcaaccacttttatgaaatcatggtcttatgttgcatgttctaattctaaccttgattcatctttct |
5525265 |
T |
|
| Q |
508 |
tatctttacctgaaaacctaaccccnnnnnnngatagatcattgatagaagatcatcatagtggaattgaaattagtgaagcatatgttgacgctttgat |
607 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||| |
|
|
| T |
5525266 |
tatctttacctgaaaatctaacacctttatttgatagatcattgatagaagatcatcatagtgg------aattagtgaagcatatgttgatgcattgat |
5525359 |
T |
|
| Q |
608 |
gaaacttggtggaccaaataataaaagtctcaaggtttgggattttttcggtgccgcgaaaaacgatgcaattaaaagcttatttgaattgactccttca |
707 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||| || | |||||| || | |||| | |||| | ||||||| || ||||||||||| |||||| |
|
|
| T |
5525360 |
gaaacatggtggaccaaataatagaagtctcaagattatgaatttttctagtccaatgaaacatgatgtagttaaaagtttgtttgaattgacaccttca |
5525459 |
T |
|
| Q |
708 |
aatattcaaaagcttaaagattatgcaaaaaatgaaatgaaaatgaatgttacaaacttgtcaactttttcagttacatgtgcttatgtgttagcatgtt |
807 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||| |||||||||||||||| ||| ||||||||||||| ||||||| |||||||||| || ||||||| |
|
|
| T |
5525460 |
aatattcaaaagcttaaagaacatggaaaaaatgatatgaaaatgaatgttataaatttgtcaacttttttagttacaagtgcttatgttttggcatgtt |
5525559 |
T |
|
| Q |
808 |
tagcaaaagctgagcaacctaaggttgaagaagtggttttcatattt |
854 |
Q |
| |
|
||| ||| || | ||||||||||||||| ||||| ||||||||||| |
|
|
| T |
5525560 |
tagtaaaggcacaacaacctaaggttgaaaaagtgattttcatattt |
5525606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 8 - 851
Target Start/End: Original strand, 5493828 - 5494674
Alignment:
| Q |
8 |
acttccactcacattctttgatcttctatggttaagatttccaccagttgaacgtcttttcttctatgaattcacaaactcacccacttttttctatgaa |
107 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||| | |||||||||||||| |
|
|
| T |
5493828 |
acttccactcactttctttgatcttttatggttaagatttccaccagttgaacttctcttcttctatgaactcacaaactcaacaacttttttctatgac |
5493927 |
T |
|
| Q |
108 |
actcttcttccaaatctcaaacactcactttcactcacacttcaacactttctccctcttgctggtaacataatttggcctactgattcatccaaaccaa |
207 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
5493928 |
actcttcttccaaatcttaaacactcactttcactcacacttcaacactttctccctcttgctggtaacataacttggcctagtgattcatccaaaccaa |
5494027 |
T |
|
| Q |
208 |
tcataaactatgttaagggagat---tctatttccttcaatgttgttgagtccaaagaaagtttcaaagatctttcttctaatcaatgtgaagcttcaaa |
304 |
Q |
| |
|
||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
5494028 |
tcataaactatgtcaagggagataattctatttctttcaatgttgttgagtccaaagaaagtttcaaagatctttcttctcatcattgtgaagcttcaaa |
5494127 |
T |
|
| Q |
305 |
aaggcatcatttgataccccttttgaaaacttcacatgaaaaagcttctttgatttcaatacaaatcactttgtttccaaacaatggtttttgcattgga |
404 |
Q |
| |
|
||| |||||||||||||| | |||||||| ||| |||||||| ||||||||| || |||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
5494128 |
aagacatcatttgataccacatttgaaaatttctcatgaaaaggcttctttgcttgcaatacaagttactttgtttccaaacaatggtttttgcattgga |
5494227 |
T |
|
| Q |
405 |
atatcatcacaccatgctgctttagatggaaaatcttccaccacttttatgaaatcatggtcctatattgcatgttctaattctaaccttgattcatctt |
504 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||| | ||||| |||||||||||||||||| ||||||||||||||||||| | ||||||||||| |
|
|
| T |
5494228 |
ataacaacacaccatgctgctttagatggaaaatctttaagtactttcatgaaatcatggtcctatgttgcatgttctaattctaaacatgattcatctt |
5494327 |
T |
|
| Q |
505 |
ttttatctttacctgaaaacctaaccccnnnnnnngatagatcattgatagaagatcatcatagtggaattgaaattagtgaagcatatgttgacgcttt |
604 |
Q |
| |
|
||||||| |||||||||| ||||| || ||||||||||||||| |||| ||| ||| |||||||| ||||||||| |||||||||| | ||| |
|
|
| T |
5494328 |
ttttatcattacctgaaactctaacacctttttttgatagatcattgatacaagaccataataatggaattggaattagtgatgcatatgttgttgattt |
5494427 |
T |
|
| Q |
605 |
gatgaaacttggtggaccaaataataaaagtctcaaggtttgggattttttcggtgccgcgaaaaacgatgcaattaaaagcttatttgaattgactcct |
704 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||| || | |||||| ||| | | |||| | |||| | ||||||| || ||||||||||| ||| |
|
|
| T |
5494428 |
gatgaaacaaggtggaccaaataatagaagtctcaagattatgaatttttctggtccagtgaaacatgatgtagttaaaagtttgtttgaattgacacct |
5494527 |
T |
|
| Q |
705 |
tcaaatattcaaaagcttaaagattatgcaaaaaatgaaatgaaaatgaatgttacaaacttgtcaactttttcagttacatgtgcttatgtgttagcat |
804 |
Q |
| |
|
||||||||||||||||||||||| ||| ||||||||| ||||||||||| |||| ||| ||||||||||||| ||||||| |||||||| | || |||| |
|
|
| T |
5494528 |
tcaaatattcaaaagcttaaagaacatggaaaaaatgatatgaaaatgaaggttataaatttgtcaacttttttagttacaagtgcttatattttggcat |
5494627 |
T |
|
| Q |
805 |
gtttagcaaaagctgagcaacctaaggttgaagaagtggttttcata |
851 |
Q |
| |
|
||||||||||||| || ||||||||||||||| |||||||||||||| |
|
|
| T |
5494628 |
gtttagcaaaagcagaacaacctaaggttgaaaaagtggttttcata |
5494674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 33 - 187
Target Start/End: Complemental strand, 4995614 - 4995457
Alignment:
| Q |
33 |
ctatggttaagatttccaccagttgaacgtcttttcttctatgaattcacaaac---tcacccacttttttctatgaaactcttcttccaaatctcaaac |
129 |
Q |
| |
|
|||||| ||||| | ||||||||||||||||| |||||||||||| || |||| ||| |||||| ||||| ||| | |||||||||||||||||| |
|
|
| T |
4995614 |
ctatgggtaagactcccaccagttgaacgtctcttcttctatgaactcccaaatgtatcaaccacttctttctttgattcaattcttccaaatctcaaac |
4995515 |
T |
|
| Q |
130 |
actcactttcactcacacttcaacactttctccctcttgctggtaacataatttggcc |
187 |
Q |
| |
|
|||| ||| ||||||||| |||||||| |||| ||||| ||||||||| || ||||| |
|
|
| T |
4995514 |
actctcttgaactcacactccaacacttcctccttcttgttggtaacatcatatggcc |
4995457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 326 - 442
Target Start/End: Complemental strand, 4982676 - 4982560
Alignment:
| Q |
326 |
tttgaaaacttcacatgaaaaagcttctttgatttcaatacaaatcactttgtttccaaacaatggtttttgcattggaatatcatcacaccatgctgct |
425 |
Q |
| |
|
|||| ||| ||||||||||||||| || | |||||| ||||| ||||||| ||||| ||| |||| ||||| ||||| ||| | |||||||||| ||| |
|
|
| T |
4982676 |
tttggaaatttcacatgaaaaagcatcaattatttcactacaagtcactttttttcctaaccatggattttgtattggtataaccacacaccatgcagct |
4982577 |
T |
|
| Q |
426 |
ttagatggaaaatcttc |
442 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
4982576 |
gttgatggaaaatcttc |
4982560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 326 - 442
Target Start/End: Complemental strand, 4995318 - 4995202
Alignment:
| Q |
326 |
tttgaaaacttcacatgaaaaagcttctttgatttcaatacaaatcactttgtttccaaacaatggtttttgcattggaatatcatcacaccatgctgct |
425 |
Q |
| |
|
|||| ||| ||||||||||||||| || | |||||| ||||| ||||||| ||||| ||| |||| ||||| ||||| ||| | |||||||||| ||| |
|
|
| T |
4995318 |
tttggaaatttcacatgaaaaagcatcaattatttcactacaagtcactttttttcctaaccatggattttgtattggtataaccacacaccatgcagct |
4995219 |
T |
|
| Q |
426 |
ttagatggaaaatcttc |
442 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
4995218 |
gttgatggaaaatcttc |
4995202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 335 - 466
Target Start/End: Complemental strand, 4978550 - 4978419
Alignment:
| Q |
335 |
ttcacatgaaaaagcttctttgatttcaatacaaatcactttgtttccaaacaatggtttttgcattggaatatcatcacaccatgctgctttagatgga |
434 |
Q |
| |
|
|||| |||||||||| || | |||||| ||||| ||||||| ||||| ||| |||| ||||| ||||| ||| | |||||||||| ||| | |||||| |
|
|
| T |
4978550 |
ttcaaatgaaaaagcatcaattatttcactacaagtcactttttttcctaaccatggattttgtattggtataaccacacaccatgcagctgttgatgga |
4978451 |
T |
|
| Q |
435 |
aaatcttccaccacttttatgaaatcatggtc |
466 |
Q |
| |
|
|||||||| ||| ||||||||| ||||||| |
|
|
| T |
4978450 |
aaatcttcaaccttgtttatgaaagcatggtc |
4978419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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