View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4347-Insertion-10 (Length: 280)

Name: NF4347-Insertion-10
Description: NF4347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4347-Insertion-10
NF4347-Insertion-10
[»] chr4 (5 HSPs)
chr4 (8-273)||(2565985-2566232)
chr4 (55-111)||(43429325-43429381)
chr4 (55-111)||(21438386-21438442)
chr4 (55-111)||(51206853-51206909)
chr4 (134-173)||(1757358-1757397)
[»] chr7 (4 HSPs)
chr7 (122-209)||(24007376-24007463)
chr7 (120-173)||(7792337-7792390)
chr7 (120-173)||(33618193-33618246)
chr7 (138-170)||(38599738-38599770)
[»] chr2 (5 HSPs)
chr2 (55-111)||(6256953-6257009)
chr2 (55-111)||(12328773-12328829)
chr2 (139-173)||(9171577-9171611)
chr2 (120-173)||(38285983-38286036)
chr2 (120-173)||(43871378-43871431)
[»] chr1 (2 HSPs)
chr1 (55-111)||(4437186-4437242)
chr1 (55-111)||(25668984-25669040)
[»] chr5 (1 HSPs)
chr5 (120-173)||(25595424-25595477)
[»] chr3 (4 HSPs)
chr3 (55-111)||(54523246-54523302)
chr3 (127-210)||(34848184-34848267)
chr3 (120-173)||(18365534-18365587)
chr3 (120-173)||(51390518-51390571)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 8 - 273
Target Start/End: Original strand, 2565985 - 2566232
Alignment:
Q  8 acttgaattaagaaactagactttcaaatcatatcataaattcatggttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtca 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  2565985 acttgaattaagaaactagactttcaaatcatatcataaattcatgcttctatgttattcatcttgtttgtctaacttccttcatccgccttctacgtca 2566084  T
Q  108 ttctaattaaaactacatcgtgttgatgttgattacatcgttattgttccgttactttattatcctcattactatcactgcttcatacatcgttaatgtt 207  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||              
T  2566085 ttctaattaaaactacatcatgttaatgttgattacatcgttattgtttcgttactttattatcctcattactatcactgcttcatacat---------- 2566174  T
Q  208 tcaatggcctgtttatatcatatgtaaatgatggacaatttttagatggattgatcaaactgtatt 273  Q
            ||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||    
T  2566175 --------ctgtttacatcatatacaaatgatggacaatttttagatggattgatcaaactgtatt 2566232  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 43429381 - 43429325
Alignment:
Q  55 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 111  Q
    |||||| |||||||||| |||||||||||||||||||||| ||||||| ||||||||    
T  43429381 ttctatgttattcatctggtttgtctaacttccttcatccttcttctatgtcattct 43429325  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 21438386 - 21438442
Alignment:
Q  55 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 111  Q
    |||||| |||||||||| |||||||||||||||||||||| ||||||| | ||||||    
T  21438386 ttctatgttattcatctggtttgtctaacttccttcatccttcttctatgccattct 21438442  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 51206909 - 51206853
Alignment:
Q  55 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 111  Q
    |||||| |||||||||| |||||||||||||||||||||| | ||||| | ||||||    
T  51206909 ttctatgttattcatctggtttgtctaacttccttcatcctttttctatgccattct 51206853  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 134 - 173
Target Start/End: Original strand, 1757358 - 1757397
Alignment:
Q  134 tgttgattacatcgttattgttccgttactttattatcct 173  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  1757358 tgttgattacatcgttattgtttcgttagtttattatcct 1757397  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 209
Target Start/End: Original strand, 24007376 - 24007463
Alignment:
Q  122 acatcgtgttgatgttgattacatcgttattgttccgttactttattatcctcattactatcactgcttcatacatcgttaatgtttc 209  Q
    ||||||||||| | ||||||||||| |||||||| | ||| ||||||||||| ||| |||||||||||||||| ||||||| ||||||    
T  24007376 acatcgtgttgttattgattacatctttattgtttcattattttattatccttattgctatcactgcttcatatatcgttattgtttc 24007463  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 7792337 - 7792390
Alignment:
Q  120 ctacatcgtgttgatgttgattacatcgttattgttccgttactttattatcct 173  Q
    ||||||||| ||| | |||||||||||||||||||| |||||||||||||||||    
T  7792337 ctacatcgtattgttattgattacatcgttattgtttcgttactttattatcct 7792390  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 33618246 - 33618193
Alignment:
Q  120 ctacatcgtgttgatgttgattacatcgttattgttccgttactttattatcct 173  Q
    ||||||||||||| | | |||||||||||||||||| | |||||||||||||||    
T  33618246 ctacatcgtgttgttatcgattacatcgttattgtttctttactttattatcct 33618193  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 170
Target Start/End: Complemental strand, 38599770 - 38599738
Alignment:
Q  138 gattacatcgttattgttccgttactttattat 170  Q
    |||||||||||||||||| ||||||||||||||    
T  38599770 gattacatcgttattgtttcgttactttattat 38599738  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 6256953 - 6257009
Alignment:
Q  55 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 111  Q
    |||||| |||||||||| |||||||||||||||||||||| ||||||| | ||||||    
T  6256953 ttctatgttattcatctggtttgtctaacttccttcatccttcttctatgccattct 6257009  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 111
Target Start/End: Original strand, 12328773 - 12328829
Alignment:
Q  55 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 111  Q
    |||||| ||||||||||||||||||||||||||||| ||| ||||||| | ||||||    
T  12328773 ttctatgttattcatcttgtttgtctaacttccttcttccttcttctatgccattct 12328829  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 173
Target Start/End: Original strand, 9171577 - 9171611
Alignment:
Q  139 attacatcgttattgttccgttactttattatcct 173  Q
    ||||||||||||||||| |||||||||||||||||    
T  9171577 attacatcgttattgtttcgttactttattatcct 9171611  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 38285983 - 38286036
Alignment:
Q  120 ctacatcgtgttgatgttgattacatcgttattgttccgttactttattatcct 173  Q
    ||||||||||||| | | |||||||| |||| |||| |||||||||||||||||    
T  38285983 ctacatcgtgttgttatcgattacattgttaatgtttcgttactttattatcct 38286036  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 43871378 - 43871431
Alignment:
Q  120 ctacatcgtgttgatgttgattacatcgttattgttccgttactttattatcct 173  Q
    ||||||| ||||| | | |||||||||||||||||| |||| ||||||||||||    
T  43871378 ctacatcatgttgttatagattacatcgttattgtttcgttgctttattatcct 43871431  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 4437242 - 4437186
Alignment:
Q  55 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 111  Q
    |||||| ||||||||||||||||||||||||||||| ||| ||||||| | ||||||    
T  4437242 ttctatgttattcatcttgtttgtctaacttccttcttccttcttctatgccattct 4437186  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 25669040 - 25668984
Alignment:
Q  55 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 111  Q
    |||||| ||||||||||||||||||||||||||||| ||| ||||||| | ||||||    
T  25669040 ttctatgttattcatcttgtttgtctaacttccttcttccttcttctatgccattct 25668984  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 25595424 - 25595477
Alignment:
Q  120 ctacatcgtgttgatgttgattacatcgttattgttccgttactttattatcct 173  Q
    ||||||||||||||| | |||||||||||||||||| | ||||| |||||||||    
T  25595424 ctacatcgtgttgatatcgattacatcgttattgtttctttactctattatcct 25595477  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 54523302 - 54523246
Alignment:
Q  55 ttctatattattcatcttgtttgtctaacttccttcatccgtcttctacgtcattct 111  Q
    |||||| |||||||||| ||||||||||||| |||||||| ||||||| | ||||||    
T  54523302 ttctatgttattcatctggtttgtctaactttcttcatccttcttctatgccattct 54523246  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 210
Target Start/End: Complemental strand, 34848267 - 34848184
Alignment:
Q  127 gtgttgatgttgattacatcgttattgttccgttactttattatcctcattactatcactgcttcatacatcgttaatgtttca 210  Q
    |||||| | ||||||||||  ||||||||  |||||||||||| ||| |||  ||||||| |||||||||| |||| |||||||    
T  34848267 gtgttgttattgattacattattattgttttgttactttattaaccttattgttatcactccttcatacattgttactgtttca 34848184  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 18365534 - 18365587
Alignment:
Q  120 ctacatcgtgttgatgttgattacatcgttattgttccgttactttattatcct 173  Q
    ||||||||||||| | | |||||||| |||||| || |||||||||||||||||    
T  18365534 ctacatcgtgttgttatggattacattgttattttttcgttactttattatcct 18365587  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 51390571 - 51390518
Alignment:
Q  120 ctacatcgtgttgatgttgattacatcgttattgttccgttactttattatcct 173  Q
    ||||||| ||||| | | ||||||||||| |||||| |||||||||||||||||    
T  51390571 ctacatcatgttgttatcgattacatcgtcattgtttcgttactttattatcct 51390518  T

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