View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4347-Insertion-14 (Length: 174)

Name: NF4347-Insertion-14
Description: NF4347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4347-Insertion-14
NF4347-Insertion-14
[»] chr6 (10 HSPs)
chr6 (78-174)||(9649940-9650036)
chr6 (78-174)||(9655957-9656053)
chr6 (90-174)||(9629796-9629880)
chr6 (7-82)||(9615384-9615459)
chr6 (87-174)||(9639897-9639984)
chr6 (89-174)||(9615299-9615384)
chr6 (7-82)||(9629880-9629955)
chr6 (7-72)||(9650036-9650101)
chr6 (7-72)||(9656053-9656118)
chr6 (7-82)||(9639984-9640059)
[»] chr7 (1 HSPs)
chr7 (7-63)||(33643724-33643780)


Alignment Details
Target: chr6 (Bit Score: 93; Significance: 1e-45; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 9649940 - 9650036
Alignment:
Q  78 gcaaaattgtaaaacttacgcagcccattgcattccattgacagcaaaagcagaagatataggagtgttaggattgatatcatagtaaggtactaaa 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9649940 gcaaaattgtaaaacttacgcagcccattgcattccattgacagcaaaagcagaagatataggggtgttaggattgatatcatagtaaggtactaaa 9650036  T

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Target: chr6; HSP #2
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 9655957 - 9656053
Alignment:
Q  78 gcaaaattgtaaaacttacgcagcccattgcattccattgacagcaaaagcagaagatataggagtgttaggattgatatcatagtaaggtactaaa 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9655957 gcaaaattgtaaaacttacgcagcccattgcattccattgacagcaaaagcagaagatataggggtgttaggattgatatcatagtaaggtactaaa 9656053  T

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Target: chr6; HSP #3
Raw Score: 77; E-Value: 5e-36
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 9629796 - 9629880
Alignment:
Q  90 aacttacgcagcccattgcattccattgacagcaaaagcagaagatataggagtgttaggattgatatcatagtaaggtactaaa 174  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9629796 aacttacgctgcccattgcattccattggcagcaaaagcagaagatataggagtgttaggattgatatcatagtaaggtactaaa 9629880  T

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Target: chr6; HSP #4
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 9615384 - 9615459
Alignment:
Q  7 accaaccacaacaatagatactatcatatacaatccacaacatagagacaatgaagctgcaattccaatcggcaaa 82  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  9615384 accaacaacaacaatagatactatcatatacaatccacaacatagagacaatgaagctgcaattccaattggcaaa 9615459  T

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Target: chr6; HSP #5
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 87 - 174
Target Start/End: Original strand, 9639897 - 9639984
Alignment:
Q  87 taaaacttacgcagcccattgcattccattgacagcaaaagcagaagatataggagtgttaggattgatatcatagtaaggtactaaa 174  Q
    |||||||||||| |||||||||||||||||||||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||    
T  9639897 taaaacttacgctgcccattgcattccattgacagcaaatgcagaggatataggggtgttgggattgatatcatagtaaggtactaaa 9639984  T

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Target: chr6; HSP #6
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 89 - 174
Target Start/End: Original strand, 9615299 - 9615384
Alignment:
Q  89 aaacttacgcagcccattgcattccattgacagcaaaagcagaagatataggagtgttaggattgatatcatagtaaggtactaaa 174  Q
    |||| ||||| |||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  9615299 aaacatacgctgcccattgcattccattgacggcaaaagcagaagatatgggggtgttaggattgatatcatagtaaggtactaaa 9615384  T

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Target: chr6; HSP #7
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 9629880 - 9629955
Alignment:
Q  7 accaaccacaacaatagatactatcatatacaatccacaacatagagacaatgaagctgcaattccaatcggcaaa 82  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  9629880 accaaccacaacaatggatactatcatatacaatccacaacatagagacaatgaagctgcaattcctattggcaaa 9629955  T

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Target: chr6; HSP #8
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 9650036 - 9650101
Alignment:
Q  7 accaaccacaacaatagatactatcatatacaatccacaacatagagacaatgaagctgcaattcc 72  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9650036 accaaccacaacaatggatactatcatatacaatccacaacatagtgacaatgaagctgcaattcc 9650101  T

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Target: chr6; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 9656053 - 9656118
Alignment:
Q  7 accaaccacaacaatagatactatcatatacaatccacaacatagagacaatgaagctgcaattcc 72  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9656053 accaaccacaacaatggatactatcatatacaatccacaacatagtgacaatgaagctgcaattcc 9656118  T

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Target: chr6; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 9639984 - 9640059
Alignment:
Q  7 accaaccacaacaatagatactatcatatacaatccacaacatagagacaatgaagctgcaattccaatcggcaaa 82  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| || ||||||    
T  9639984 accaaccacaacaatggatactatcatatacaatccacaacatagtgacaatgatgctgcaattcctattggcaaa 9640059  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 33643780 - 33643724
Alignment:
Q  7 accaaccacaacaatagatactatcatatacaatccacaacatagagacaatgaagc 63  Q
    |||||||||||||| ||| || | |||||||| ||||||||||||| ||| ||||||    
T  33643780 accaaccacaacaacagagaccagcatatacattccacaacatagaaacagtgaagc 33643724  T

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