View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4347-Insertion-2 (Length: 688)
Name: NF4347-Insertion-2
Description: NF4347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4347-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 549; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 30 - 670
Target Start/End: Original strand, 1923413 - 1924053
Alignment:
| Q |
30 |
gtcacttctatatatagttgttctaaattcaatgt-----gatgatgcatgtacgcactctcaatatgattcaacatgtggtaacacaatttgatggttt |
124 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1923413 |
gtcacttctatatatagttgttctaaattcaatgtgatgtgatgatgcatgtacgcactctcaatatgattcaacatgtggtaacacaatttgatggttt |
1923512 |
T |
|
| Q |
125 |
ggctaaaagttaagcaactctttgtatcgaaattatttgttagaactaattaagattattcaaatacaatgcttaattaatcttgatattctgatgataa |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
1923513 |
ggctaaaagttaagcaactctttgtatcgaaattatttgttagaactaattaagattattcaaatagaatgcttaattaatcttgatattttgatgataa |
1923612 |
T |
|
| Q |
225 |
caatgcaagtgaataatatgccctctcacatttgctcaagtgttgagagaaataatatcttgactaaaattactaattagtttcagagttctcgttagat |
324 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
1923613 |
caatgcaagtgaataatttgccctctcacatttgctcaagtgttgagagaaataatatcttgactaaaattactaattagtttcagagttctctttagat |
1923712 |
T |
|
| Q |
325 |
ttaaatttgaataaggtttcaattgttaaggataagtttatcccaatatatgttttaaatgtgttaaatatatttacatatataacgttgtgtt----at |
420 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
1923713 |
ttaaatttgaataagatttcaattgttaaggataagtttatcccaatatatgttttacatgtgttaaatatatttacatatataacgttgtgttattaat |
1923812 |
T |
|
| Q |
421 |
tagagatcacgtatggctcttcatcagttgagtgtctctatagtgtagacctacatggtttgtccctgaaatatagtttcaatagatttttatgcatgtc |
520 |
Q |
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| T |
1923813 |
tagagatcacgtatggctcttcatcagttgagtgtctctatagtgtagacctacatggtttgtccctgaaatatagtttcaatagatttttatgcatgtc |
1923912 |
T |
|
| Q |
521 |
ggcaagcgtaggtggatattatgagatttttctgtgatgacctcttgagtaggattctcacgtttttggttatgtccttttctatatcatcaagtgtgca |
620 |
Q |
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| T |
1923913 |
ggcaagcgtaggtggatattatgagatttttctgtgatgacctcttga---------tcacgtttttggtgatgtccttttctagatcatcaagtgtgca |
1924003 |
T |
|
| Q |
621 |
gtaaatatgtgtttaggtggttgggtggattcaattttactttaatattt |
670 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1924004 |
gtaaatatgtgtttaggtggttgggtggattcaattttactttaatattt |
1924053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 1e-52; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 327 - 444
Target Start/End: Original strand, 17498830 - 17498947
Alignment:
| Q |
327 |
aaatttgaataaggtttcaattgttaaggataagtttatcccaatatatgttttaaatgtgttaaatatatttacatatataacgttgtgttattagaga |
426 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17498830 |
aaatttgaataagatttcaattgttaaggataagtttatcacaatatatgttttacatgtgttaaatatatttacatatataacgttgtgttattagaga |
17498929 |
T |
|
| Q |
427 |
tcacgtatggctcttcat |
444 |
Q |
| |
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|||||||||||||||||| |
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| T |
17498930 |
tcacgtatggctcttcat |
17498947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 327 - 444
Target Start/End: Complemental strand, 17554384 - 17554267
Alignment:
| Q |
327 |
aaatttgaataaggtttcaattgttaaggataagtttatcccaatatatgttttaaatgtgttaaatatatttacatatataacgttgtgttattagaga |
426 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17554384 |
aaatttgaataagatttcaattgttaaggataagtttatcacaatatatgttttacatgtgttaaatatatttacatatataacgttgtgttattagaga |
17554285 |
T |
|
| Q |
427 |
tcacgtatggctcttcat |
444 |
Q |
| |
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|||||||||||||||||| |
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|
| T |
17554284 |
tcacgtatggctcttcat |
17554267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 529 - 640
Target Start/End: Original strand, 17499113 - 17499224
Alignment:
| Q |
529 |
taggtggatattatgagatttttctgtgatgacctcttgagtaggattctcacgtttttggttatgtccttttctatatcatcaagtgtgcagtaaatat |
628 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| |
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| T |
17499113 |
taggtggatattatgagatttttctgtgatgacctcttgagtaggattctcacgtttttggtgatgtccttttctagatcatcaagtgtgcagtaactat |
17499212 |
T |
|
| Q |
629 |
gtgtttaggtgg |
640 |
Q |
| |
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|||||||||||| |
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|
| T |
17499213 |
gtgtttaggtgg |
17499224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 529 - 640
Target Start/End: Complemental strand, 17554101 - 17553990
Alignment:
| Q |
529 |
taggtggatattatgagatttttctgtgatgacctcttgagtaggattctcacgtttttggttatgtccttttctatatcatcaagtgtgcagtaaatat |
628 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||| |
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| T |
17554101 |
taggtggatattatgagatttttctgtgatgacctcttgagtaggattctcacgtttttggtgatgtccttttctagatcatcaagtgtgcagtaactat |
17554002 |
T |
|
| Q |
629 |
gtgtttaggtgg |
640 |
Q |
| |
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|||||||||||| |
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| T |
17554001 |
gtgtttaggtgg |
17553990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 473 - 520
Target Start/End: Original strand, 17498951 - 17498998
Alignment:
| Q |
473 |
acatggtttgtccctgaaatatagtttcaatagatttttatgcatgtc |
520 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17498951 |
acatggtttgttcctgaaatatagtttcaatagatttttatgcatgtc |
17498998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 473 - 520
Target Start/End: Complemental strand, 17554263 - 17554216
Alignment:
| Q |
473 |
acatggtttgtccctgaaatatagtttcaatagatttttatgcatgtc |
520 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
17554263 |
acatggtttgttcctgaaatatagtttcaatagatttttatgcatgtc |
17554216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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