View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4347-Insertion-3 (Length: 679)

Name: NF4347-Insertion-3
Description: NF4347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4347-Insertion-3
NF4347-Insertion-3
[»] chr7 (2 HSPs)
chr7 (173-679)||(40283421-40283920)
chr7 (79-177)||(40283961-40284059)


Alignment Details
Target: chr7 (Bit Score: 439; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 173 - 679
Target Start/End: Complemental strand, 40283920 - 40283421
Alignment:
Q  173 ttatacattggaattttatataaatgtacgtagaaatctaataaaaaactcattataaaaaacttgttaacgtatataggttctatcttgaatttaaaaa 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40283920 ttatacattggaattttatataaatgtacgtagaaatctaataaaaaactcattataaaaaacttgttaacgtatataggttctatcttgaatttaaaaa 40283821  T
Q  273 atttaacatatccatatcctatcacatcggcactatgtattcggacttagtagaccgagacacagtgctgctgctgcatc---tctgacaaaacacctca 369  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  40283820 atttaacatatccatatcttatcacatcggcactatgtattcggacttagtagaccgagacacagtgctgctgctgcatcatctctgacaaaacacctca 40283721  T
Q  370 aaactagtatgcattaccaccatggaccatggcatgcactttgcagccctacacatcaggattcaattgtgacagaaactccacttattgtcttgaattg 469  Q
    |||||| ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40283720 aaacta-tatgcattaccaccatgg-------catgcactttgcagccctacacatcaggattcaattgtgacagaaactccacttattgtcttgaattg 40283629  T
Q  470 atttttgtggttgctgcacaaattatgctctagccaacaaaatttccatcatcattcatacaatacctcaaagttcccaacaacgattatcaaggcatag 569  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||  | ||||||||||||    
T  40283628 atttttgtggttgctgcacaaattatgctctagccaacaaaatttccatcatcattcatacaatacctcaaagtccccaacaac--tcatcaaggcatag 40283531  T
Q  570 caaaccaggacaagactaagtatatgaggcaattaaatacaagaccactgctcttgtagcatcattcactcatagcaaaactaaataagaaaatcacatt 669  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40283530 caaaccaggacaagactaagtatatgaggcaattaaatacaagaccactgctcttgtagcatcattcactcatagcaaaactaaataagaaaatcacatt 40283431  T

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Target: chr7; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 79 - 177
Target Start/End: Complemental strand, 40284059 - 40283961
Alignment:
Q  79 aattatataaaaatatccttctgaatgggcaagaattggttgatgaataagcattggctttcagtgatgtaaagtgtagctcaaacatcatagtttata 177  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40284059 aattatataaaaatatccttctcaatgggcaagaattggttgatgaataagcattggctttcagtaatgtaaagtgtagctcaaacatcatagtttata 40283961  T

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