View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4347-Insertion-5 (Length: 505)
Name: NF4347-Insertion-5
Description: NF4347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4347-Insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 116; Significance: 9e-59; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 299 - 497
Target Start/End: Complemental strand, 39100963 - 39100766
Alignment:
| Q |
299 |
cagttttcttggatgcaagagttttgccagtttggtccttgtttgcatcatataagcacagatga-tctagcagcttcaatattttgtttctttgtgata |
397 |
Q |
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| T |
39100963 |
cagttttcttggatgcaagagatt-gccggtttggttcttgttggcattatataagcacggatgaatctagcagcttcgatattttgtttcttcatgata |
39100865 |
T |
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| Q |
398 |
agtttctggacaaaatctgcatggtacactaaagtttcaattcaacaaaactaaactagttatgccatcaagtcagttctaattaaccaaaactaagcag |
497 |
Q |
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| T |
39100864 |
agtttctcgacaaaatctgcaaggtacgctaaaatttcaattcaacaaaact-aactagttatgccattatgtcagttctaattaaccaaaactaagcag |
39100766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 336 - 497
Target Start/End: Complemental strand, 39605197 - 39605036
Alignment:
| Q |
336 |
cttgtttgcatcatataagcacagatga-tctagcagcttcaatattttgtttctttgtgataagtttctggacaaaatctgcatggtacactaaagttt |
434 |
Q |
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| T |
39605197 |
cttgttggcattatataagcacgaatgaatctagcagcttcaatattttgtttcttcatgataagtttctgaacaaaatctgcaaggtgcaccaaaattt |
39605098 |
T |
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| Q |
435 |
caattcaacaaaactaaactagttatgccatcaagtcagttctaattaaccaaaactaagcag |
497 |
Q |
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| T |
39605097 |
cacttcaacaaaact-aactagttatgccatcaagtcagtcccaattaaccaaaactaagcag |
39605036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 65 - 199
Target Start/End: Complemental strand, 39101228 - 39101095
Alignment:
| Q |
65 |
agaaagaacagggaccaacaaaattgagatgaccctgtttgagaatcgtctc--gagttttcattctttcatacaataacagacaaattgcataatagat |
162 |
Q |
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| T |
39101228 |
agaaagaacagggaccaacaaagttgagataaccctgtttgagaatcttctcttgagttttgattctttctaacaataacagacaaattgcataa---at |
39101132 |
T |
|
| Q |
163 |
caatagagatagattgttgttaattcatttgcacatt |
199 |
Q |
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| T |
39101131 |
cagtagagataggttcctgttaattcatttgcacatt |
39101095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 76 - 293
Target Start/End: Complemental strand, 39605482 - 39605272
Alignment:
| Q |
76 |
ggaccaacaaaattgagatgaccctgtttgagaatcgtctcgagttttcattctttcatacaataacagacaaattgcata-atagatcaatagagatag |
174 |
Q |
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| T |
39605482 |
ggaccaacaaaattgagataaccctgtttgagaatcttctc--------attctttctaacaataacagacattttgcatggatcaataaagagagggag |
39605391 |
T |
|
| Q |
175 |
attgttgttaattcatttgcacattgaacatatggaggatggtcctgctttcacaatcaacatgttgatttataactaacaaacaggtgcgtgaagatgg |
274 |
Q |
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| T |
39605390 |
attcttgctaattcatttgcacattgaacattaggaggatggtcctgatttcacagtccacgtattaatttacaaccaacatgcaggtgcatgaagatgg |
39605291 |
T |
|
| Q |
275 |
aataattcataaaatagaa |
293 |
Q |
| |
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||| |||||||||||||| |
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| T |
39605290 |
gatatttcataaaatagaa |
39605272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 180 - 298
Target Start/End: Original strand, 39502897 - 39503016
Alignment:
| Q |
180 |
tgttaattcatttgcacattgaacatatggaggatggtcctgctttcacaatcaacatgttgatttataactaacaaacaggtgcgtgaagatggaat-a |
278 |
Q |
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||||| ||||||||||| |||| ||| ||||||||||||||| ||||||| | |||| || ||||||||| |||| ||||||| |||| ||||||| | |
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| T |
39502897 |
tgttacttcatttgcacgttgagcatctggaggatggtcctgatttcacatttaacacattaatttataaccaacatgcaggtgcatgaacatggaataa |
39502996 |
T |
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| Q |
279 |
attcataaaatagaattagc |
298 |
Q |
| |
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||| |||||||||||||||| |
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| T |
39502997 |
atttataaaatagaattagc |
39503016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 363 - 494
Target Start/End: Original strand, 39503116 - 39503249
Alignment:
| Q |
363 |
atctagcagcttcaatattttgtttctttgtgataagtttctggacaaaatctgcatggtacactaaagtttcaattcaacaaaactaa--actagttat |
460 |
Q |
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|||||||||||||| | ||||||| || ||||||||||||| |||||||||||| |||||| ||| ||||| |||| |||| |||| | | |||| |
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| T |
39503116 |
atctagcagcttcagtcttttgttcctgcatgataagtttctgaacaaaatctgcaaggtacaacaaaatttcacttcatcaaacctaatgagttattat |
39503215 |
T |
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| Q |
461 |
gccatcaagtcagttctaattaaccaaaactaag |
494 |
Q |
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| T |
39503216 |
gccatcaagtcggttcaaattaactaaaactaag |
39503249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 39101325 - 39101271
Alignment:
| Q |
12 |
gtaccactttaatttctctgacacaaaatatacacttgtagaagaacgtttctaga |
67 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||| | |||||||||||| |
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| T |
39101325 |
gtacaactttaatttctctgacacaaa-tatacacttgtagtaaaacgtttctaga |
39101271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 442
Target Start/End: Complemental strand, 33153198 - 33153104
Alignment:
| Q |
349 |
tataagcacagatga-tctagcagcttcaatattttgtttctttgtgataagtttctggacaaaatctgcatggtacactaaagtttcaattcaa |
442 |
Q |
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|||||||||| |||| |||| |||||||||||| ||| ||||| |||||| ||||| |||||||||||| | | || |||||||||| ||||| |
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| T |
33153198 |
tataagcacatatgaatctaacagcttcaatatgttgcttcttccggataagattctgaacaaaatctgcaagttgcaataaagtttcacttcaa |
33153104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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