View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4347-Insertion-6 (Length: 491)
Name: NF4347-Insertion-6
Description: NF4347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4347-Insertion-6 |
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Alignment Details
Target: chr6 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 12102260 - 12102116
Alignment:
| Q |
5 |
acatggatcatgtggtagaaagctgcacacaactgagagagaacaatctgaagaactgctataaagtgcttcataatgttgttgactcgatggtattatc |
104 |
Q |
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| T |
12102260 |
acatggatcatgtggtagaaaactgcacacaactgagagagagcaatctgaagaactgctataaagtgcttcataatgttgttgactcgatgatattatc |
12102161 |
T |
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| Q |
105 |
actgtaccacctcgttatcgtttcaacaacaaaaagagggaactc |
149 |
Q |
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| T |
12102160 |
actgttccacctcgttatcgtttcaacaacaaaaagagggaactc |
12102116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 570299 - 570082
Alignment:
| Q |
11 |
atcatgtggtagaaagctgcacacaactgagagagaacaatctgaagaactgctataaagtgcttcataatgttgttgactcgatggtattatc------ |
104 |
Q |
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| T |
570299 |
atcatgtggtagaaaactgcacacaactgagggagatcaatttgaagaactgctataaagtgcataaaaatattgttgactcgatgatattatcaagacc |
570200 |
T |
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| Q |
105 |
----------------actgtaccacctcgttatcgtttcaacaacaaaaagagggaactcttcttgagtcatgtctgccttctctgctaatattttgca |
188 |
Q |
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| T |
570199 |
atcattgagaaagataactgttccacctcgttaccgtttcaacaacaacaagagggagctcttcttgggtcatgtatgccttctcggctagtattttgca |
570100 |
T |
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| Q |
189 |
aatcctctgctgaagttt |
206 |
Q |
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| T |
570099 |
actcttctgccgaagttt |
570082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 569925 - 569869
Alignment:
| Q |
219 |
aatgcacacaatagggtgctgtatgcagtttgaaatagtattgtttttcattgcttt |
275 |
Q |
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| T |
569925 |
aatgcaaacaattggatgctatatgcagtttgaattagtattgtttttcattgcttt |
569869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 21235506 - 21235445
Alignment:
| Q |
11 |
atcatgtggtagaaagctgcacacaactgagagagaacaatctgaagaactgctataaagtg |
72 |
Q |
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| T |
21235506 |
atcatgtggtagaaaactgcacacaactgagggagatcaatttgaagaactgctataaagtg |
21235445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 45245238 - 45245326
Alignment:
| Q |
13 |
catgtggtagaaagctgcacacaactgagagagaacaatctgaagaactgctataaagtgcttcataatgttgttgactcgatggtatt |
101 |
Q |
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||||||||||||| ||||||||||| | ||||| |||| ||| | |||||| | |||||| | ||||||| ||| |||||||||||| |
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| T |
45245238 |
catgtggtagaaaattgcacacaacttacagagatcaatttgaggcactgctttcaagtgcatgctaatgttattgtctcgatggtatt |
45245326 |
T |
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