View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4347_high_3 (Length: 288)
Name: NF4347_high_3
Description: NF4347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4347_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 35029636 - 35029909
Alignment:
| Q |
1 |
agttgcaaacaacattaatagctctaaacaaattaaggtggaagaaaaagagtggacactgacccaaataatgttgtttgttatattacaccaataagat |
100 |
Q |
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| T |
35029636 |
agttgcaaacaacattaatagctctaaacaaattaaggtggaagaaaaagagtggacactgacccaaataatgttgtttgttatattacaccaataagat |
35029735 |
T |
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| Q |
101 |
tctaacacaacatgatcaaatcaaaacagccatgttgtgaacatgtgtgcagttaagccggtgatttgggaaggtagggaaagaaaagaacctatgacag |
200 |
Q |
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| T |
35029736 |
tctaacacaacatgatca-----aaacagccatgttgtgaacatgtgtgcagttaagccggtgatttgggaaggtagggaaagaaaagaacctatgacag |
35029830 |
T |
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| Q |
201 |
acattattattatatgaatatgatgatgatatagacaaagtgaataatggatgaaagattatggtccaaatagtataat |
279 |
Q |
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| T |
35029831 |
acattattattatatgaatatgatgatgatatagacaaagtgaattatggatgaaagattatggtccaaatagtataat |
35029909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 7 - 212
Target Start/End: Complemental strand, 36860186 - 36859983
Alignment:
| Q |
7 |
aaacaacattaatagctctaaacaaattaaggtggaagaaaaagagtggacactgacccaaataatgttgtttgttatattacaccaataagattctaac |
106 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36860186 |
aaacaacattaattgctctaaacaaattaaggtggaagaaaaagagtggacactgacccaaataatgttgtttgttatattacaccgataagattctaac |
36860087 |
T |
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| Q |
107 |
acaacatgatcaaatcaaaacagccatgttgtgaacatgtgtgc-agttaagccggtgatttgggaaggtagggaaagaaaaga--acctatgacagaca |
203 |
Q |
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|||||||| | ||||||| ||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||| |||||| | |
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| T |
36860086 |
acaacatg-----agcaaaacaaccatgttgtgagcatgtgtgcaagttaagcctgtgatttgggaaggtagggaaagaaaagagcacctaggacagaaa |
36859992 |
T |
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| Q |
204 |
ttattatta |
212 |
Q |
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||||||||| |
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| T |
36859991 |
ttattatta |
36859983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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