View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4347_high_6 (Length: 239)
Name: NF4347_high_6
Description: NF4347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4347_high_6 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 35029298 - 35029519
Alignment:
| Q |
18 |
ttagactatggaattcctcgtcccctacaatttcaaggactaaaacgatgaatcgttaatgagcagattctaccatataggtgataataattgttgatca |
117 |
Q |
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| T |
35029298 |
ttagacgatggaattcctcgtcccctacaatttcaaggactaaaacgatgaatcgttaatgagcagattctaccatataggtgataataattgttgatca |
35029397 |
T |
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| Q |
118 |
taccagaaccagctgagagactccttgtagaatacatatgctcatggccatatgcagacataataacactccaagattaatctatctttaggatccaatt |
217 |
Q |
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| T |
35029398 |
taccagaaccagctgagagactccttgtagaatacatatgctcatggccatatgcagacataataacactccaagattaatctatctttaagatccaatt |
35029497 |
T |
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| Q |
218 |
caaataacaccaaaaacttgct |
239 |
Q |
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| T |
35029498 |
caaataacaccaaaaacttgct |
35029519 |
T |
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Back To:
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Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 31 - 226
Target Start/End: Complemental strand, 36860488 - 36860290
Alignment:
| Q |
31 |
ttcctcgtcccctacaatttcaaggactaaaacgatgaatcgttaatgagcagattctaccatataggtgataataattgttgatcata------ccaga |
124 |
Q |
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|||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
36860488 |
ttcctcgtcccctacaatttcaagaactaaaacgatgaaccgttaatgagcagaatctaccatataggtgataataattgttgatcatattcataccaga |
36860389 |
T |
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| Q |
125 |
accagctgagagactccttgtagaatacatatgctcatggccatatgcagacataataacactccaagattaatctatctttaggatccaattcaaataa |
224 |
Q |
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| T |
36860388 |
accagctgagagactccttgtagaatacatatgctcatggccataagcagacataataacactccaagcttaattta---ttaggatccaattcaaataa |
36860292 |
T |
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