View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4347_low_2 (Length: 399)
Name: NF4347_low_2
Description: NF4347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4347_low_2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Original strand, 28497448 - 28497846
Alignment:
| Q |
1 |
aaatttgtccaataaaattaaagactatgtattatttcactcataaaacagttctagtagttttatttggtttggttttattagctcatgtccatttgta |
100 |
Q |
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| T |
28497448 |
aaatttgtccaataaaattaaagactatgtattatttcactcataaaacagttctagtagttttatttggtttggttttattagctcatgtccatttgta |
28497547 |
T |
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| Q |
101 |
accctaacagttgctaattgaaaccaaatgattgctctaatagacatcattcatatgtaaactaaaattttgtgaaaattttggtgaggctctagccaca |
200 |
Q |
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| T |
28497548 |
atcctaacagttgctaaatgaaaccaaataattgctctaatagacatccttcatatgtaaactaaaattttgtgataattttggtgaggctctagccaca |
28497647 |
T |
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| Q |
201 |
cttatgcttagagtagattcacccatgccaacaaaagataatttacctcgtcgtgaagtgttgcttgtagtttcattgttgtgctctagagggtgcgata |
300 |
Q |
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| T |
28497648 |
cttaggcttagagtagattcacccatgccaacaaaagataatttacctcgtcgtgaagtattgcttgtgggttcgttgttgtgctctagagggtgcgata |
28497747 |
T |
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| Q |
301 |
aggaggaataaattaatcatcttttccttggatgcgacttcttcggtaccatttggcatcttgttttttggtggttgataatttacatgatttctccct |
399 |
Q |
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| T |
28497748 |
aggaggaataaattaatcatctttttcttggatgcgacttctttggtagtatttgacatcttgttttttgatggttgataatttacatggtttctccct |
28497846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 5476199 - 5476323
Alignment:
| Q |
8 |
tccaataaaattaaagactatgtattatttcactcataa-aacagttctagtagttttatttggtttggttttattagctcatgtccatttgtaacccta |
106 |
Q |
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| T |
5476199 |
tccaatgaaattaaaaactatgtaatatttcactcaaaataatagttttagtagttttatttgaactagttttattagatcatgttcatttgtagtccta |
5476298 |
T |
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| Q |
107 |
acagttgctaattgaaaccaaatga |
131 |
Q |
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| T |
5476299 |
ataattgctgattgtaacaaaatga |
5476323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 8323191 - 8323290
Alignment:
| Q |
1 |
aaatttgtccaataaaattaaagactatgtattatttcactcataaaacagttctagtagttttatttggtttggttttattagctcatgtccatttgta |
100 |
Q |
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| T |
8323191 |
aaatttgccaaatgaaattaaaaactatgtattatttcactcgaaaagctgttttaatagttttattgaggttagttttattagctcatattcatttgta |
8323290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 39721531 - 39721596
Alignment:
| Q |
55 |
tagtagttttatttggtttggttttattagctcatgtccatttgtaaccctaacagttgctaattg |
120 |
Q |
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| T |
39721531 |
tagtagttttatttgggctatttttattagttcaagttcatttgtaaccctaacaattgttaattg |
39721596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 1806357 - 1806269
Alignment:
| Q |
15 |
aaattaaagactatgtattatttca-ctcataaaacagttctagtagttttatttggtttggttttattagctcatgtccatttgtaac |
102 |
Q |
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| T |
1806357 |
aaattaaagactgtgtactatttcacctaaaataacagttgtagtagttttgtttggtctaattttattagttcaagttcatttgtaac |
1806269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 109
Target Start/End: Complemental strand, 47377713 - 47377616
Alignment:
| Q |
10 |
caataaaattaaagactatgtattatttcactcataa-aacagttctagtagttttatttggtttggttttattagctcatgtccatttgtaaccctaac |
108 |
Q |
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|||| ||||||||||| || ||||||||| ||| || ||||||| |||||||||||||||| |||||||||||||||||| |||| |||||||||| |
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| T |
47377713 |
caattaaattaaagacgat--attatttcattcaaaataacagtt-tagtagttttatttgggcaagttttattagctcatgtctatttataaccctaac |
47377617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 42059954 - 42059984
Alignment:
| Q |
11 |
aataaaattaaagactatgtattatttcact |
41 |
Q |
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| T |
42059954 |
aataaaattaaagactatgtattatttcact |
42059984 |
T |
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