View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4347_low_3 (Length: 352)
Name: NF4347_low_3
Description: NF4347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4347_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 39032595 - 39032910
Alignment:
| Q |
18 |
attgcaaaatcgttggtcatggctttgatgaatacatgcggatcgataaagacgaggtgaatatttatgatgttgaggttaagatcaaaagaaaatcaat |
117 |
Q |
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| T |
39032595 |
attgcaaaatcgttggtcatggctttgatgaatacaagcggatcgataaagaccaaatgaatatttatgatgttgaggttaagatcaaaagaaaaccgat |
39032694 |
T |
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| Q |
118 |
gaggtaaaaactgttattatggattagcgtatggcttgttcttgaatgaagttaacaatcttgttaattttaaggataatgctacttctctcgacatatt |
217 |
Q |
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| T |
39032695 |
gaggttaaaagtgttattatggattagcgtatggcttgttcttgaatgaagttaacaatcttgttaattttaaggataatgctacttctcgcgacata-t |
39032793 |
T |
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| Q |
218 |
ttctagcaaaaagatgacgaccttgttgctagnnnnnnnnattgcaactacaattaatcaactctttcttttttatccaaccacccatgatgtccaccaa |
317 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39032794 |
ttctagcaaaaagatgacgaccttgttgctag-tttttttattgcaactac----aatcgactctttcttttttatccaaccacccatgatgtccaccaa |
39032888 |
T |
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| Q |
318 |
tttagatctaacggtgacattc |
339 |
Q |
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|||||||||||||||||||||| |
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| T |
39032889 |
tttagatctaacggtgacattc |
39032910 |
T |
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