View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4347_low_9 (Length: 236)
Name: NF4347_low_9
Description: NF4347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4347_low_9 |
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| [»] scaffold0220 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 19218367 - 19218147
Alignment:
| Q |
1 |
tcaacacataacaaagaacacataacataacaaggtaactttgaacatgtttctcaatccggtataacgttggtttctatttcctcttcttgtttttaat |
100 |
Q |
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| T |
19218367 |
tcaacacataacaaagaacacataacataacaaggtaactttgaacatgtttctcaatccggtataacgttggtttctatttcctcttcatgtttttaat |
19218268 |
T |
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| Q |
101 |
taattgatgttctttgtttggttctattcattgatgttagtttatagcttattaaagcttagtaaaatattcaagtatgaagcatagtataaacgaagaa |
200 |
Q |
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| T |
19218267 |
taattgatgttctttgtttggttctattcattgatgttaatttatagcttattaaagcttagtaaaatgttcaagtatgaagcatagtataaacgaagaa |
19218168 |
T |
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| Q |
201 |
acatagaaaaataaatatata |
221 |
Q |
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| T |
19218167 |
acatagaaaaataaatatata |
19218147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 222
Target Start/End: Complemental strand, 24997744 - 24997559
Alignment:
| Q |
32 |
aaggtaactttgaacatgtttctcaatccggtataacgttggtttctatttcctcttcttgtttttaattaattgatgttctttgtttggttctattcat |
131 |
Q |
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| T |
24997744 |
aaggtaactttgaaaatgtttttcatttagatatatccttgatctctctttcctcttcatgtttttaattaattgatgttctt-gtttggttctggtcat |
24997646 |
T |
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| Q |
132 |
tgatgttagtttatagcttattaaagcttagtaaaatattcaagtatgaagcatagtataaacgaagaaacatagaaaaataaatatatat |
222 |
Q |
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| T |
24997645 |
tgatgttaatttatagcttattatagcttagtaaaatgtt--ggtagg--gtgtagtataaacgaagaaacgtagaaaaataaatatatat |
24997559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 156
Target Start/End: Original strand, 24999811 - 24999899
Alignment:
| Q |
68 |
cgttggtttctatttcctcttcttgtttttaattaattgatgttctttgtttggttctattcattgatgttagtttatagcttattaaa |
156 |
Q |
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| T |
24999811 |
cgttggtctctccttcctcttcacgtttttaaataattgatgttctttgtttggttctgatcattgatgttagtttagagcttagtaaa |
24999899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 24999914 - 24999950
Alignment:
| Q |
185 |
tagtataaacgaagaaacatagaaaaataaatatata |
221 |
Q |
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| T |
24999914 |
tagtataaatgaagaaacatagaaaaataaatatata |
24999950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 27778816 - 27778767
Alignment:
| Q |
164 |
aaaatattcaagtatgaagcatagtataaacgaagaaacatagaaaaata |
213 |
Q |
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| T |
27778816 |
aaaatgttcaagtatgaagcatattgtaaacaaagaaacgtagaaaaata |
27778767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0220 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0220
Description:
Target: scaffold0220; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 28679 - 28619
Alignment:
| Q |
127 |
ttcattgatgttagtttatagcttattaaagcttagtaaaatattcaagtatgaagcatag |
187 |
Q |
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| T |
28679 |
ttcattgatgttatttaatagctaaatatagcttaataaaacattcacgtatgaagcatag |
28619 |
T |
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