View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4348-Insertion-1 (Length: 244)
Name: NF4348-Insertion-1
Description: NF4348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4348-Insertion-1 |
 | |
|
| [»] chr1 (14 HSPs) |
| |
|
| [»] scaffold0690 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 14)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 9300140 - 9299896
Alignment:
| Q |
1 |
gctaggaggagaaatgaatttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9300140 |
gctaggaggagaaatgaatttctgcaacgaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggaca |
9300041 |
T |
|
| Q |
101 |
acattgagatggtggattttgcccattgttcccacttcatttatgaactccttcccatctccttcagcgttattgagcatcttaacagcaacttgaattt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9300040 |
acattgagatggtggattttgcccattgttcccacttcatttatgaactccttcccatctccttcagcgttattgagcatcttaacagcaacttgaattt |
9299941 |
T |
|
| Q |
201 |
gacttgataatttacc-ttgtaaacagctccatgagctccttctc |
244 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9299940 |
gacttgataatttacctttgtaaacagctccatgagctccttctc |
9299896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 9257570 - 9257813
Alignment:
| Q |
1 |
gctaggaggagaaatgaatttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9257570 |
gctaggaggagaaatgaatttctgcaacgaaccatttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaagcggaca |
9257669 |
T |
|
| Q |
101 |
acattgagatggtggattttgcccattgttcccacttcatttatgaactccttcccatctccttcagcgttattgagcatcttaacagcaacttgaattt |
200 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||| |
|
|
| T |
9257670 |
gcattgagatggtggattttacccatagttcccacttcatttatgaactccttcccatctccttctgcgttattgatcatcttaacagcaactagaattt |
9257769 |
T |
|
| Q |
201 |
gacttgataatttaccttgtaaacagctccatgagctccttctc |
244 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||||||||||||| |
|
|
| T |
9257770 |
gacttgataattgcctttgtaaacagctccttgagctccttctc |
9257813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 8 - 244
Target Start/End: Original strand, 9466802 - 9467039
Alignment:
| Q |
8 |
ggagaaatgaatttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattga |
107 |
Q |
| |
|
||||||| ||||||||||| |||||||||| || | || ||||||| | | || | ||||||||| || || ||||||||||||||||||||||| | |
|
|
| T |
9466802 |
ggagaaagaaatttctgcaaagaaccacttggaaaaagatcgtagactaaaccgcggtaaaatccatcagcgcagaagccaagcaaacggacaacattaa |
9466901 |
T |
|
| Q |
108 |
gatggtggattttgcccattgttcccacttcatttatgaactccttcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttga |
207 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
9466902 |
gatgatggatttttcccatagttcccacttcatttatgaactccttaccatctccctcagtgttattgagcatcttaacggcaacgagaatttggcttga |
9467001 |
T |
|
| Q |
208 |
taatttacc-ttgtaaacagctccatgagctccttctc |
244 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9467002 |
caatttacctttgtaaacagctccatgagctccttctc |
9467039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 8962341 - 8962108
Alignment:
| Q |
10 |
agaaatgaatttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgaga |
109 |
Q |
| |
|
||||||||| || |||||| ||||| | ||||| |||||||| || | |||||||| ||||||||| || ||||||||||| || ||||||||||| | | |
|
|
| T |
8962341 |
agaaatgaaattttgcaacgaaccattagggaaaaagtcataaaccaaagcacgataaaatccatcagcgcaaaagccaagtaaccggacaacattaaca |
8962242 |
T |
|
| Q |
110 |
tggtggattttgcccattgttcccacttcatttatgaactccttcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgata |
209 |
Q |
| |
|
|| |||||||| ||||| ||||| ||||||||||||||||| ||||||||||||| | ||||| |||||||| |||||||| |||||||||| |||| |
|
|
| T |
8962241 |
tgatggatttttcccatagttcctacttcatttatgaactctctcccatctccttctgtattattaagcatcttcacagcaacaagaatttgactcgata |
8962142 |
T |
|
| Q |
210 |
atttacc-ttgtaaacagctccatgagctccttc |
242 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| |
|
|
| T |
8962141 |
atttacctttgtagacagctccatgagctccttc |
8962108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 8939414 - 8939181
Alignment:
| Q |
10 |
agaaatgaatttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgaga |
109 |
Q |
| |
|
||||||||| || ||||| ||||| ||||||| |||||||| || | |||||||| ||||||||||||||||||||||||||| ||||||||||| | | |
|
|
| T |
8939414 |
agaaatgaaattttgcaatgaaccatttgggaaaaagtcataaaccaaagcacgataaaatccatcggcacaaaagccaagcaaccggacaacattaaca |
8939315 |
T |
|
| Q |
110 |
tggtggattttgcccattgttcccacttcatttatgaactccttcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgata |
209 |
Q |
| |
|
|| || ||||| ||||| ||||||||||||||||||||||| |||||||||| || | ||| | |||||||| || ||||| |||||||||| |||| |
|
|
| T |
8939314 |
tgatgaatttttcccatagttcccacttcatttatgaactctctcccatctccctcggtattactaagcatcttcacggcaacaagaatttgactcgata |
8939215 |
T |
|
| Q |
210 |
atttacc-ttgtaaacagctccatgagctccttc |
242 |
Q |
| |
|
||||||| || || |||||||||||||||||||| |
|
|
| T |
8939214 |
atttacctttatagacagctccatgagctccttc |
8939181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 8926988 - 8926755
Alignment:
| Q |
10 |
agaaatgaatttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgaga |
109 |
Q |
| |
|
||||||||| || |||||| ||||| | ||||| |||||||| || |||||||||| ||||||||||||||||||||||||||| || |||||||| | | |
|
|
| T |
8926988 |
agaaatgaagttttgcaacgaaccattcgggaaaaagtcataaaccagagcacgataaaatccatcggcacaaaagccaagcaaccgaacaacattaaca |
8926889 |
T |
|
| Q |
110 |
tggtggattttgcccattgttcccacttcatttatgaactccttcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgata |
209 |
Q |
| |
|
|| |||||||| ||||| |||||||| |||||||||||||| |||||||||| || | ||| | |||||||| |||||||| ||||||| | |||| |
|
|
| T |
8926888 |
tgatggatttttcccatagttcccacctcatttatgaactcactcccatctccctctgtattactaagcatcttcacagcaaccataatttgattcgata |
8926789 |
T |
|
| Q |
210 |
atttacc-ttgtaaacagctccatgagctccttc |
242 |
Q |
| |
|
||||||| || || |||||||||||||||||||| |
|
|
| T |
8926788 |
atttacctttatagacagctccatgagctccttc |
8926755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 9364436 - 9364201
Alignment:
| Q |
8 |
ggagaaatgaatttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattga |
107 |
Q |
| |
|
||||||||||||||||||||| ||||| ||| || ||||||||||||| ||||||| |||| ||||| || || |||||||||||||| || ||||||| |
|
|
| T |
9364436 |
ggagaaatgaatttctgcaacgaaccatttgaaaaaaagtcatagactaaagcacgacgaaaaccatctgcgcagaagccaagcaaacgaacgacattga |
9364337 |
T |
|
| Q |
108 |
gatggtggattttgcccattgttcccacttcatttatgaactccttcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttga |
207 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||| |||||||||||| | | | ||||| || ||||| || || ||| ||||||| | || |
|
|
| T |
9364336 |
gatggtgaattttgcccatggttcccacttcatttatgaattccttcccatcttcctttgtattattaagaatcttcacggctactagaatttggttcga |
9364237 |
T |
|
| Q |
208 |
taatttacc-ttgtaaacagctccatgagctccttc |
242 |
Q |
| |
|
||| ||||| || ||||||||||||||||| ||||| |
|
|
| T |
9364236 |
taacttacctttataaacagctccatgagccccttc |
9364201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 10 - 235
Target Start/End: Original strand, 9242610 - 9242836
Alignment:
| Q |
10 |
agaaatgaatttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgaga |
109 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||| ||||||||||||| |||||| |||||||||| || || ||||||||||||| || ||||| ||| |
|
|
| T |
9242610 |
agaaatgaatttctgcaacgaaccatttgggaaaaagtcatagactaaagcacggcgaaatccatccgcgcagtagccaagcaaacgaacgacatttaga |
9242709 |
T |
|
| Q |
110 |
tggtggattttgcccattgttcccacttcatttatgaactccttcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgata |
209 |
Q |
| |
|
|| || || |||||||| |||||||||||||||||||| |||||||||||| | || || ||||| || ||||| || || ||| ||||||| | |||| |
|
|
| T |
9242710 |
tgatgaatcttgcccatggttcccacttcatttatgaattccttcccatcttcctctgcattattaagaatcttcacggctactagaatttggttcgata |
9242809 |
T |
|
| Q |
210 |
atttacc-ttgtaaacagctccatgag |
235 |
Q |
| |
|
||||||| || |||||||||||||||| |
|
|
| T |
9242810 |
atttacctttataaacagctccatgag |
9242836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 242
Target Start/End: Complemental strand, 9337577 - 9337342
Alignment:
| Q |
8 |
ggagaaatgaatttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattga |
107 |
Q |
| |
|
||||||||||||||||||||| ||||| ||| || ||||||||||||| ||||||| |||| ||||| || || ||||| |||||||| || ||||||| |
|
|
| T |
9337577 |
ggagaaatgaatttctgcaacgaaccatttgaaaaaaagtcatagactaaagcacgacgaaaaccatctgcgcagaagccgagcaaacgaacgacattga |
9337478 |
T |
|
| Q |
108 |
gatggtggattttgcccattgttcccacttcatttatgaactccttcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttga |
207 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||| |||||||||||| | | | ||||| || ||||| || || ||| ||||||| | || |
|
|
| T |
9337477 |
gatggtgaattttgcccatggttcccacttcatttatgaattccttcccatcttcctatgtattattaagaatcttcacggctactagaatttggttcga |
9337378 |
T |
|
| Q |
208 |
taatttacc-ttgtaaacagctccatgagctccttc |
242 |
Q |
| |
|
||| ||||| || ||||||||||||||||| ||||| |
|
|
| T |
9337377 |
taacttacctttataaacagctccatgagccccttc |
9337342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 50 - 192
Target Start/End: Original strand, 8979311 - 8979453
Alignment:
| Q |
50 |
tagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggtggattttgcccattgttcccacttcatttatgaact |
149 |
Q |
| |
|
||||| ||| ||||||||| ||| || ||||| ||||||||||| || |||||||||| ||||||||||| ||||| |||||||||| | ||||||| |
|
|
| T |
8979311 |
tagacaagaacacgatgaattccctctgcacagaagccaagcaatcgaacaacattgatgtggtggatttttcccataattcccacttcgctaatgaact |
8979410 |
T |
|
| Q |
150 |
ccttcccatctccttcagcgttattgagcatcttaacagcaac |
192 |
Q |
| |
|
| ||||| |||||||| | || ||||| ||||| |||||||| |
|
|
| T |
8979411 |
ctttcccgtctccttctgtattgttgagaatcttcacagcaac |
8979453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 50 - 162
Target Start/End: Original strand, 8861911 - 8862023
Alignment:
| Q |
50 |
tagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggtggattttgcccattgttcccacttcatttatgaact |
149 |
Q |
| |
|
||||| ||||| || |||| |||||| || || |||||||||||||| || || |||| ||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
8861911 |
tagacaagagcgcggtgaattccatctgcgcagaagccaagcaaacgaaccacgttgatgtggtggattttgcccataattcccacttcattgatgaact |
8862010 |
T |
|
| Q |
150 |
ccttcccatctcc |
162 |
Q |
| |
|
| ||||| ||||| |
|
|
| T |
8862011 |
ctttcccttctcc |
8862023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 164
Target Start/End: Original strand, 9070051 - 9070135
Alignment:
| Q |
80 |
caaaagccaagcaaacggacaacattgagatggtggattttgcccattgttcccacttcatttatgaactccttcccatctcctt |
164 |
Q |
| |
|
||||||||||||||||| || ||||||| |||||| ||||||||||| || |||||||| | |||||||| ||||| ||||||| |
|
|
| T |
9070051 |
caaaagccaagcaaacgaaccacattgatatggtgaattttgcccataatttccacttcagtgatgaactctttcccttctcctt |
9070135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 9420760 - 9420989
Alignment:
| Q |
14 |
atgaatttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggt |
113 |
Q |
| |
|
||||| ||||| ||| ||||| |||| ||||| | ||| || |||||||| | |||||||||| ||||| |||| ||| || |||||||||| || | |
|
|
| T |
9420760 |
atgaagttctgtaacgaaccatttggaaagaaattataaacaagagcacggtaggatccatcggcgcaaaatccaaccaagcgaacaacattgatgtgat |
9420859 |
T |
|
| Q |
114 |
ggattttgcccattgttcccacttcatttatgaactccttcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgataattt |
213 |
Q |
| |
|
| ||||| ||||| | | |||||| || |||||||| || ||||| || || | ||| || |||||||| ||||| || |||||| | | |||||||| |
|
|
| T |
9420860 |
gaatttttcccatagctttcacttcgttaatgaactcttttccatcgccctcggtgtttttaagcatcttcacagccacaagaatttcattagataattt |
9420959 |
T |
|
| Q |
214 |
acc-ttgtaaacagctccatgagctccttc |
242 |
Q |
| |
|
||| ||| |||| || |||||||||||||| |
|
|
| T |
9420960 |
acctttgaaaactgcaccatgagctccttc |
9420989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 242
Target Start/End: Original strand, 9437843 - 9438072
Alignment:
| Q |
14 |
atgaatttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagatggt |
113 |
Q |
| |
|
||||| ||||| ||| ||||| |||| ||||| | ||| || |||||||| | |||||||||| ||||| |||| ||| || |||||||||| || | |
|
|
| T |
9437843 |
atgaagttctgtaacgaaccatttggaaagaaattataaacaagagcacggtaggatccatcggcgcaaaatccaaccaagcgaacaacattgatgtgat |
9437942 |
T |
|
| Q |
114 |
ggattttgcccattgttcccacttcatttatgaactccttcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgataattt |
213 |
Q |
| |
|
| ||||| ||||| | | |||||| || |||||||| || ||||| || || | ||| || |||||||| ||||| || |||||| | | |||||||| |
|
|
| T |
9437943 |
gaatttttcccatagctttcacttcgttaatgaactcttttccatcgccctcggtgtttttaagcatcttcacagccacaagaatttcattagataattt |
9438042 |
T |
|
| Q |
214 |
acc-ttgtaaacagctccatgagctccttc |
242 |
Q |
| |
|
||| ||| |||| || |||||||||||||| |
|
|
| T |
9438043 |
acctttgaaaactgcaccatgagctccttc |
9438072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 11 - 242
Target Start/End: Complemental strand, 9171533 - 9171301
Alignment:
| Q |
11 |
gaaatgaatttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgagat |
110 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
9171533 |
gaaatgaatttctgcaaagaaccatttgggaaaaaatcatagactagagcacgatgaaatccatcggcgcaaaagccaagcaaacggacaacatttagat |
9171434 |
T |
|
| Q |
111 |
ggtggattttgcccattgttcccacttcatttatgaactccttcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgataa |
210 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || | |||||| |||||||||||| ||||| ||||||| |||||||| |
|
|
| T |
9171433 |
ggtggattttgcccatagttcccacttcatttatgaactccttcccatctccctctgtgttatttagcatcttaacaccaactagaatttggcttgataa |
9171334 |
T |
|
| Q |
211 |
tttacc-ttgtaaacagctccatgagctccttc |
242 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
9171333 |
tttacctttgtaaacagctccatgagctccttc |
9171301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 1644 - 1410
Alignment:
| Q |
9 |
gagaaatgaatttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgag |
108 |
Q |
| |
|
|||| ||||||||||| ||| ||||| |||| || |||||||| |||| ||||||| |||| ||||| || ||||||||||||||||| || |||||||| |
|
|
| T |
1644 |
gagatatgaatttctgtaacgaaccatttggaaaaaagtcataaactaaagcacgacgaaaaccatctgcgcaaaagccaagcaaacgaacgacattgag |
1545 |
T |
|
| Q |
109 |
atggtggattttgcccattgttcccacttcatttatgaactccttcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgat |
208 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||| || || ||||| || ||||| || || ||| ||||||| | ||| |
|
|
| T |
1544 |
atggtggattttgcccatggttcccacttcatttatgaattccttcccatctccctctgcattattaagaatcttcacggctactagaatttggttcgat |
1445 |
T |
|
| Q |
209 |
aatttacc-ttgtaaacagctccatgagctccttc |
242 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||| |
|
|
| T |
1444 |
aatttacctttataaacagctccatgagccccttc |
1410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 9 - 242
Target Start/End: Original strand, 15910462 - 15910696
Alignment:
| Q |
9 |
gagaaatgaatttctgcaacaaaccacttgggaagaagtcatagactagagcacgatgaaatccatcggcacaaaagccaagcaaacggacaacattgag |
108 |
Q |
| |
|
|||| |||||||| || ||| ||||| |||| || |||||||| |||| |||||||||||| ||||| | |||||||| |||||||| || |||||||| |
|
|
| T |
15910462 |
gagatatgaatttttgtaacgaaccatttggaaaaaagtcataaactaaagcacgatgaaaaccatctgagcaaaagccgagcaaacgaacgacattgag |
15910561 |
T |
|
| Q |
109 |
atggtggattttgcccattgttcccacttcatttatgaactccttcccatctccttcagcgttattgagcatcttaacagcaacttgaatttgacttgat |
208 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||||| || || ||||| || ||||| || || ||| ||||||| | ||| |
|
|
| T |
15910562 |
atggtggattttgcccatggttcccacttcatttatgaattccttcccatctccctctgcattattaagaatcttcacggctactagaatttggttcgat |
15910661 |
T |
|
| Q |
209 |
aatttacc-ttgtaaacagctccatgagctccttc |
242 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||| |
|
|
| T |
15910662 |
aatttacctttataaacagctccatgagccccttc |
15910696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University