View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4348-Insertion-2 (Length: 243)
Name: NF4348-Insertion-2
Description: NF4348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4348-Insertion-2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 6 - 243
Target Start/End: Complemental strand, 27112857 - 27112620
Alignment:
| Q |
6 |
aagattaacaagagcattggcaggtgcaacaacattagcagcaatattagttgttaaagttgcaagacttataccaacaattgcaagtacactagttgta |
105 |
Q |
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| T |
27112857 |
aagattaacaagagcattggcaggtgcaacaacattagcagcaatattagttgttaaagttgcaagacttataccaacaattgcaagtacactagttgta |
27112758 |
T |
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| Q |
106 |
aatccaccaattctaccaagaagttgaattggatttgaaataacttcaccaaaaatcacttttgtagatgaagtaactactaaaccaacaaatgtaaata |
205 |
Q |
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| T |
27112757 |
aatccaccaattctaccaagaagttgaattggatttgaaataacttcaccaaatatcacttttgtagatgaagtaacaactagaccaacaaatgtaaata |
27112658 |
T |
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| Q |
206 |
gccccataaaaataggtaacccaatttgacctataact |
243 |
Q |
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| T |
27112657 |
gccccataaaaataggtaacccaatttgacctataact |
27112620 |
T |
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Back To:
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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 218
Target Start/End: Original strand, 41610983 - 41611195
Alignment:
| Q |
6 |
aagattaacaagagcattggcaggtgcaacaacattagcagcaatattagttgttaaagttgcaagacttataccaacaattgcaagtacactagttgta |
105 |
Q |
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| T |
41610983 |
aagatttacaagagcgtttgcaggtgctacaacattggcagcaatattggttgtaattgtagctaggcttataccaagaattgctaagattgtagttaca |
41611082 |
T |
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| Q |
106 |
aatccaccaattctaccaagaagttgaattggatttgaaataacttcaccaaaaatcacttttgtagatgaagtaactactaaaccaacaaatgtaaata |
205 |
Q |
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| T |
41611083 |
aatccaccaattttaccaagtaattgaattgggttggaaatgacatgaccaaatataatttttgttgatgatgttactactataccaacaaatgtgaatg |
41611182 |
T |
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| Q |
206 |
gccccataaaaat |
218 |
Q |
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| T |
41611183 |
ctcccataaaaat |
41611195 |
T |
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