View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4348_high_1_N (Length: 546)

Name: NF4348_high_1_N
Description: NF4348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4348_high_1_N
NF4348_high_1_N
[»] chr5 (4 HSPs)
chr5 (40-546)||(38816178-38816684)
chr5 (230-379)||(38821782-38821928)
chr5 (509-539)||(24906250-24906280)
chr5 (450-488)||(35665559-35665597)
[»] chr6 (1 HSPs)
chr6 (509-539)||(34073276-34073306)
[»] chr3 (3 HSPs)
chr3 (509-539)||(5440965-5440995)
chr3 (509-546)||(4466538-4466575)
chr3 (509-546)||(13807238-13807275)
[»] chr7 (2 HSPs)
chr7 (510-539)||(17852091-17852120)
chr7 (511-539)||(15680900-15680928)
[»] scaffold0450 (1 HSPs)
scaffold0450 (511-539)||(8564-8592)
[»] chr1 (1 HSPs)
chr1 (511-539)||(48547938-48547966)


Alignment Details
Target: chr5 (Bit Score: 499; Significance: 0; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 40 - 546
Target Start/End: Original strand, 38816178 - 38816684
Alignment:
Q  40 tcagtgaaagaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcatacaactatatacccttctctaac 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816178 tcagtgaaagaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcatacaactatatacccttctctaac 38816277  T
Q  140 agacaaagtcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatctagacaaaatgtaaaaccctaag 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816278 agacaaagtcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatctagacaaaatgtaaaaccctaag 38816377  T
Q  240 aacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaattgaatgttc 339  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816378 aacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaattgaatgttc 38816477  T
Q  340 cacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatctcccataaatatctagcaccgaga 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38816478 cacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatctcccataaatatctagcaccgaga 38816577  T
Q  440 cttcatattaaaggtgtgtccagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataactatgaagcacggacactcctcgaattag 539  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  38816578 cttcatattaaaggtgtgtgcagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataactatgaatcacggacactcctcgaattag 38816677  T
Q  540 ccatgtc 546  Q
    |||||||    
T  38816678 ccatgtc 38816684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 230 - 379
Target Start/End: Original strand, 38821782 - 38821928
Alignment:
Q  230 aaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaa 329  Q
    |||||||||||||||| |||||  ||| ||||||| ||   ||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| |    
T  38821782 aaaccctaagaacaagatttaagcaaatctaaacatca---taccatttgtccctttctcacccacccaagccttcctccttcttctttagatgggcaca 38821878  T
Q  330 ttgaatgttccacagcaagatcactcaaatcttcacctgaacacacaaca 379  Q
      ||||  |||||||||||||| |||||||||||||||| ||||||||||    
T  38821879 ccgaatagtccacagcaagatcgctcaaatcttcacctggacacacaaca 38821928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 539
Target Start/End: Original strand, 24906250 - 24906280
Alignment:
Q  509 aactatgaagcacggacactcctcgaattag 539  Q
    |||||||||||||||||||||||||||||||    
T  24906250 aactatgaagcacggacactcctcgaattag 24906280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 450 - 488
Target Start/End: Original strand, 35665559 - 35665597
Alignment:
Q  450 aaggtgtgtccagtgtccaacagatgtcagtctccaaca 488  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  35665559 aaggtgtgtccagtgtccaacacatgtcagtttccaaca 35665597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 539
Target Start/End: Original strand, 34073276 - 34073306
Alignment:
Q  509 aactatgaagcacggacactcctcgaattag 539  Q
    |||||||||||||||||||||||||||||||    
T  34073276 aactatgaagcacggacactcctcgaattag 34073306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 539
Target Start/End: Original strand, 5440965 - 5440995
Alignment:
Q  509 aactatgaagcacggacactcctcgaattag 539  Q
    |||||||||||||||||||||||||||||||    
T  5440965 aactatgaagcacggacactcctcgaattag 5440995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 546
Target Start/End: Original strand, 4466538 - 4466575
Alignment:
Q  509 aactatgaagcacggacactcctcgaattagccatgtc 546  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  4466538 aactatgaagcacggacactcctcgaataagccgtgtc 4466575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 546
Target Start/End: Complemental strand, 13807275 - 13807238
Alignment:
Q  509 aactatgaagcacggacactcctcgaattagccatgtc 546  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  13807275 aactatgaaacacggacactcctcgaattaggcatgtc 13807238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 510 - 539
Target Start/End: Complemental strand, 17852120 - 17852091
Alignment:
Q  510 actatgaagcacggacactcctcgaattag 539  Q
    ||||||||||||||||||||||||||||||    
T  17852120 actatgaagcacggacactcctcgaattag 17852091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 539
Target Start/End: Complemental strand, 15680928 - 15680900
Alignment:
Q  511 ctatgaagcacggacactcctcgaattag 539  Q
    |||||||||||||||||||||||||||||    
T  15680928 ctatgaagcacggacactcctcgaattag 15680900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 539
Target Start/End: Original strand, 8564 - 8592
Alignment:
Q  511 ctatgaagcacggacactcctcgaattag 539  Q
    |||||||||||||||||||||||||||||    
T  8564 ctatgaagcacggacactcctcgaattag 8592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 539
Target Start/End: Original strand, 48547938 - 48547966
Alignment:
Q  511 ctatgaagcacggacactcctcgaattag 539  Q
    |||||||||||||||||||||||||||||    
T  48547938 ctatgaagcacggacactcctcgaattag 48547966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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