View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4348_high_3 (Length: 361)
Name: NF4348_high_3
Description: NF4348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4348_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 2 - 350
Target Start/End: Original strand, 48290729 - 48291078
Alignment:
| Q |
2 |
gattaaagatgctacatctctttcttcatgtccctttccatttacaccactcattgcaagctttgaacgcttcttatatttcttattatcaacatctacc |
101 |
Q |
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| T |
48290729 |
gattaaagatgctacatctctttcttcatgtccctttccatttacaccactcattgcaagctttgaacgcttcttatatttcttattatcaacatctacc |
48290828 |
T |
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| Q |
102 |
tctttaattttctgttttctcaaaccttcttcacatttaattaatttcatcaattttggccaataaaaggagagaaatagatattgttattattaattt- |
200 |
Q |
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| T |
48290829 |
tctttaattttctgttttctcaaaccttcttcacatttaattaatttcatcaattttgaccaataaaaggagagaaatagatattattattattaattta |
48290928 |
T |
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| Q |
201 |
nnnnnnntatgggggagagattaaatttattaagctttcatattatataaaggttaatggaagtagtataaaatatcccaaattgatatttgtaatttta |
300 |
Q |
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| T |
48290929 |
aaaaaaatatgggggagagattaaatttattaagctttcatattatataaaggttaatggaagtagtataaaatatcccaaattgatatttgtaatttta |
48291028 |
T |
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| Q |
301 |
aattatttttgccttgccctctgaacctgcttatggttagttagtttcat |
350 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48291029 |
aattatttttgccttgccctctgaacctgcttatggttagttagtttcat |
48291078 |
T |
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