View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4348_high_4 (Length: 350)

Name: NF4348_high_4
Description: NF4348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4348_high_4
NF4348_high_4
[»] chr1 (3 HSPs)
chr1 (176-317)||(45511709-45511854)
chr1 (287-330)||(5328037-5328080)
chr1 (287-329)||(5328685-5328727)
[»] chr7 (4 HSPs)
chr7 (286-336)||(37623928-37623978)
chr7 (287-327)||(37622827-37622867)
chr7 (287-341)||(7847109-7847163)
chr7 (287-331)||(44520328-44520372)
[»] chr8 (5 HSPs)
chr8 (287-336)||(39069084-39069133)
chr8 (287-341)||(39070194-39070248)
chr8 (287-329)||(11690853-11690895)
chr8 (287-343)||(18087683-18087739)
chr8 (287-331)||(42737352-42737396)
[»] chr2 (10 HSPs)
chr2 (289-336)||(518294-518341)
chr2 (287-336)||(27478902-27478951)
chr2 (287-329)||(519631-519673)
chr2 (287-341)||(10454498-10454552)
chr2 (287-336)||(24460563-24460612)
chr2 (290-341)||(20606110-20606161)
chr2 (290-341)||(21178443-21178494)
chr2 (290-341)||(27477835-27477886)
chr2 (299-341)||(20919220-20919262)
chr2 (287-331)||(7575455-7575499)
[»] chr3 (2 HSPs)
chr3 (287-341)||(54410584-54410638)
chr3 (287-336)||(55136397-55136446)
[»] chr4 (2 HSPs)
chr4 (287-341)||(47649526-47649580)
chr4 (287-331)||(13861754-13861798)
[»] chr5 (2 HSPs)
chr5 (287-331)||(31547661-31547705)
chr5 (287-331)||(37272550-37272594)


Alignment Details
Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 176 - 317
Target Start/End: Original strand, 45511709 - 45511854
Alignment:
Q  176 ttaaatgattaaattttacgtcaaatattgatgagcaagaacaatttgagaaaaaacttttgagtcttgatacatcatcttaaaaggacctaaacaggat 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45511709 ttaaatgattaaattttacgtcaaatattgatgagcaagaacaatttgagaaaaaacttttcagtcttgatacatcatcttaaaaggacctaaacaggat 45511808  T
Q  276 t----nnnnnnnnngaagataaaagactaatgtgttacaaataaat 317  Q
    |             ||||||||||||||||||||||||||||||||    
T  45511809 taaaaaaaaaagaagaagataaaagactaatgtgttacaaataaat 45511854  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 330
Target Start/End: Complemental strand, 5328080 - 5328037
Alignment:
Q  287 aagataaaagactaatgtgttacaaataaataaaataaatgacc 330  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||    
T  5328080 aagataaaagactaaagtgttacaaataaataagataaatgacc 5328037  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 5328685 - 5328727
Alignment:
Q  287 aagataaaagactaatgtgttacaaataaataaaataaatgac 329  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||    
T  5328685 aagataaaagactaaagtgttacaagtaaataagataaatgac 5328727  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 286 - 336
Target Start/End: Original strand, 37623928 - 37623978
Alignment:
Q  286 gaagataaaagactaatgtgttacaaataaataaaataaatgacctttagt 336  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  37623928 gaagataaaagactaatgtgttacaaataaataagataaaagacctttagt 37623978  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 327
Target Start/End: Complemental strand, 37622867 - 37622827
Alignment:
Q  287 aagataaaagactaatgtgttacaaataaataaaataaatg 327  Q
    |||||||| |||||||||||||||||||||||| |||||||    
T  37622867 aagataaaggactaatgtgttacaaataaataagataaatg 37622827  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 7847163 - 7847109
Alignment:
Q  287 aagataaaagactaatgtgttacaaataaataaaataaatgacctttagtataat 341  Q
    |||||||||||| ||||| |||||||||||||| ||| ||||| |||||| ||||    
T  7847163 aagataaaagaccaatgtattacaaataaataagatagatgacttttagtgtaat 7847109  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 331
Target Start/End: Complemental strand, 44520372 - 44520328
Alignment:
Q  287 aagataaaagactaatgtgttacaaataaataaaataaatgacct 331  Q
    |||||||||||| ||  |||||||||||||||| |||||||||||    
T  44520372 aagataaaagaccaaaatgttacaaataaataagataaatgacct 44520328  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 287 - 336
Target Start/End: Complemental strand, 39069133 - 39069084
Alignment:
Q  287 aagataaaagactaatgtgttacaaataaataaaataaatgacctttagt 336  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  39069133 aagataaaggactaatgtgttacaaataaataagataaatgacctttagt 39069084  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 39070194 - 39070248
Alignment:
Q  287 aagataaaagactaatgtgttacaaataaataaaataaatgacctttagtataat 341  Q
    |||||||| |||||||||||||||||||||||||||||| ||| |||||| ||||    
T  39070194 aagataaaggactaatgtgttacaaataaataaaataaaggacatttagtgtaat 39070248  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 329
Target Start/End: Complemental strand, 11690895 - 11690853
Alignment:
Q  287 aagataaaagactaatgtgttacaaataaataaaataaatgac 329  Q
    |||||||||||| ||| |||||||||||||||| |||||||||    
T  11690895 aagataaaagaccaatatgttacaaataaataagataaatgac 11690853  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 343
Target Start/End: Complemental strand, 18087739 - 18087683
Alignment:
Q  287 aagataaaagactaatgtgttacaaataaataaaataaatgacctttagtataatct 343  Q
    |||||||| ||| || ||||||||||||||||| ||||| |||||||| | ||||||    
T  18087739 aagataaaggaccaaagtgttacaaataaataagataaaagacctttaatgtaatct 18087683  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 42737352 - 42737396
Alignment:
Q  287 aagataaaagactaatgtgttacaaataaataaaataaatgacct 331  Q
    |||||||| ||||||  |||||||||||||||| |||||||||||    
T  42737352 aagataaaggactaaaatgttacaaataaataagataaatgacct 42737396  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 289 - 336
Target Start/End: Complemental strand, 518341 - 518294
Alignment:
Q  289 gataaaagactaatgtgttacaaataaataaaataaatgacctttagt 336  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||    
T  518341 gataaaggactaatgtgttacaaataaataagataaatgacctttagt 518294  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 287 - 336
Target Start/End: Original strand, 27478902 - 27478951
Alignment:
Q  287 aagataaaagactaatgtgttacaaataaataaaataaatgacctttagt 336  Q
    |||||||| |||||||||||||||||||||||| ||||| ||||||||||    
T  27478902 aagataaaggactaatgtgttacaaataaataagataaaggacctttagt 27478951  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 329
Target Start/End: Original strand, 519631 - 519673
Alignment:
Q  287 aagataaaagactaatgtgttacaaataaataaaataaatgac 329  Q
    |||||||| |||||||||||||||||||||||| |||||||||    
T  519631 aagataaaggactaatgtgttacaaataaataagataaatgac 519673  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 10454552 - 10454498
Alignment:
Q  287 aagataaaagactaatgtgttacaaataaataaaataaatgacctttagtataat 341  Q
    |||||||| |||||||||||||||||||||||| ||||| ||| |||| ||||||    
T  10454552 aagataaaggactaatgtgttacaaataaataagataaaagacatttaatataat 10454498  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 336
Target Start/End: Original strand, 24460563 - 24460612
Alignment:
Q  287 aagataaaagactaatgtgttacaaataaataaaataaatgacctttagt 336  Q
    |||||||| || ||||||||||||||||||||| ||||| ||||||||||    
T  24460563 aagataaaggattaatgtgttacaaataaataagataaaggacctttagt 24460612  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 20606110 - 20606161
Alignment:
Q  290 ataaaagactaatgtgttacaaataaataaaataaatgacctttagtataat 341  Q
    ||||| |||||||||||||||||||||||| ||||| ||| |||||| ||||    
T  20606110 ataaaggactaatgtgttacaaataaataagataaaggacatttagtgtaat 20606161  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 21178443 - 21178494
Alignment:
Q  290 ataaaagactaatgtgttacaaataaataaaataaatgacctttagtataat 341  Q
    ||||| |||||||||||||||||||||||| ||||| ||| |||||| ||||    
T  21178443 ataaaggactaatgtgttacaaataaataagataaaggacatttagtgtaat 21178494  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 27477886 - 27477835
Alignment:
Q  290 ataaaagactaatgtgttacaaataaataaaataaatgacctttagtataat 341  Q
    ||||| |||||||||||||||||||||||| ||||||||  |||||| ||||    
T  27477886 ataaaggactaatgtgttacaaataaataagataaatgatatttagtgtaat 27477835  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 20919262 - 20919220
Alignment:
Q  299 taatgtgttacaaataaataaaataaatgacctttagtataat 341  Q
    ||||||||||||||||||||| ||||||||| |||||| ||||    
T  20919262 taatgtgttacaaataaataagataaatgacatttagtgtaat 20919220  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 7575455 - 7575499
Alignment:
Q  287 aagataaaagactaatgtgttacaaataaataaaataaatgacct 331  Q
    |||||||| |||||| ||||||||||||||||| ||||| |||||    
T  7575455 aagataaaggactaaagtgttacaaataaataagataaaagacct 7575499  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 54410584 - 54410638
Alignment:
Q  287 aagataaaagactaatgtgttacaaataaataaaataaatgacctttagtataat 341  Q
    |||||||| |||||||||||||||||||||||| ||||||||| |||||| ||||    
T  54410584 aagataaaggactaatgtgttacaaataaataagataaatgacatttagtgtaat 54410638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 287 - 336
Target Start/End: Original strand, 55136397 - 55136446
Alignment:
Q  287 aagataaaagactaatgtgttacaaataaataaaataaatgacctttagt 336  Q
    |||||||| ||||||||||||| |||||||||| ||||| ||||||||||    
T  55136397 aagataaaggactaatgtgttataaataaataagataaaggacctttagt 55136446  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 47649580 - 47649526
Alignment:
Q  287 aagataaaagactaatgtgttacaaataaataaaataaatgacctttagtataat 341  Q
    |||||||| |||||||||||| ||||||||||||||||| ||| |||||| ||||    
T  47649580 aagataaaggactaatgtgttgcaaataaataaaataaaggacatttagtgtaat 47649526  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 13861754 - 13861798
Alignment:
Q  287 aagataaaagactaatgtgttacaaataaataaaataaatgacct 331  Q
    |||||||||||| || ||||||||||||||||||||||| |||||    
T  13861754 aagataaaagaccaaagtgttacaaataaataaaataaaggacct 13861798  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 331
Target Start/End: Complemental strand, 31547705 - 31547661
Alignment:
Q  287 aagataaaagactaatgtgttacaaataaataaaataaatgacct 331  Q
    |||||||||||| || ||||||||||||||||| ||||| |||||    
T  31547705 aagataaaagaccaaagtgttacaaataaataagataaaggacct 31547661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 331
Target Start/End: Original strand, 37272550 - 37272594
Alignment:
Q  287 aagataaaagactaatgtgttacaaataaataaaataaatgacct 331  Q
    |||||||| ||| || ||||||||||||||||| |||||||||||    
T  37272550 aagataaaggaccaaagtgttacaaataaataagataaatgacct 37272594  T

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