View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4348_high_5 (Length: 349)
Name: NF4348_high_5
Description: NF4348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4348_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 11 - 348
Target Start/End: Complemental strand, 13138414 - 13138077
Alignment:
| Q |
11 |
caaaggagggggatataaagccaaaacctccttagaatttaacaaacaaactcacacattcctgatttatttttagctataaggatgctttaatacaatt |
110 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13138414 |
caaaggagggggagataaagccaaaacctccttagaatttaacaaacaaactcacacattcttgatttatttttagctataaggatgctttaatacaatt |
13138315 |
T |
|
| Q |
111 |
aggagcacttaaccagaccataagatgattaagggataagcctaagttagctaaagtgtcagcacaactgtttcctaattccctaaacacatgggtagcc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13138314 |
aggagcacttaaccagaccataagatgattaagggataagcctaagttagctaaagtgtcagcacaactgtttcctaattccctaaacacatgggtagcc |
13138215 |
T |
|
| Q |
211 |
agaaagtacattgatgatacaatgtgcatacaattcttccctaaagagttgtattagatatcaatgtggcaagagaactttttcaatgaattttcttgtt |
310 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13138214 |
agaaagtacactgatgatacaatgtgcatacaattcttccctaaagagttgtattagatatcaatgtggcaagagaactttttcaatgaattttcttgtt |
13138115 |
T |
|
| Q |
311 |
tctaaatctcatttgattttttgcaaaccaaactgagt |
348 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13138114 |
tctaaatctcatttgatttcttgcaaaccaaactgagt |
13138077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 16472632 - 16472677
Alignment:
| Q |
11 |
caaaggagggggatataaagccaaaacctccttagaatttaacaaa |
56 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| |||||||| |
|
|
| T |
16472632 |
caaaggagggggacatcaagccaaaacctccttagaaattaacaaa |
16472677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University