View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4348_high_7 (Length: 305)
Name: NF4348_high_7
Description: NF4348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4348_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 647960 - 647670
Alignment:
| Q |
1 |
acaatcaagtatttccaatggattttcttcagaaatgctttatctctcattataagatcatagtgtgttaaaagaacattaaacttcgcctcccctgaaa |
100 |
Q |
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| T |
647960 |
acaatcaagtatttccaatggattttcttcagaaatgctttatctctcattataagatcatagtgtgttaaaagaacattaaacttcccctcccctgaaa |
647861 |
T |
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| Q |
101 |
tttcttcctttattgctttcctctcatccattcgtccatcatataaaacagctgtaatgctgaatcataacgaaaatgcacaagtgattaagaaagtgaa |
200 |
Q |
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| T |
647860 |
tttcttcctttattgctttcctctcatccattcgtccatcatataaaacagctgtaatgctgaatcataacgaaaatgcacaagtgattaagaaagtgaa |
647761 |
T |
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| Q |
201 |
tatgatgcgcaaaatccattgccttctcccaaacaggagaacagattaggaaattactattctatatctaacttcgacatacctaggagcc |
291 |
Q |
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| T |
647760 |
tatgatgcgcagaatccattaccttctcccaaacaggagaacagattaggaaattactattctatatctaacttcgacatacctaggagcc |
647670 |
T |
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Target: chr1 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 22 - 189
Target Start/End: Original strand, 47344665 - 47344832
Alignment:
| Q |
22 |
attttcttcagaaatgctttatctctcattataagatcatagtgtgttaaaagaacattaaacttcgcctcccctgaaatttcttcctttattgctttcc |
121 |
Q |
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| T |
47344665 |
attttcttgagaaacgctttgtctctcattataagatcataatgtgtaatcataacattaaatttcccctctcctgaatattcttcctttattgcttttc |
47344764 |
T |
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| Q |
122 |
tctcatccattcgtccatcatataaaacagctgtaatgctgaatcataacgaaaatgcacaagtgatt |
189 |
Q |
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| T |
47344765 |
tctcatccatccgtccatcataaagaatagttttaatgctgtatcagaaagaaaaggcacaagtgatt |
47344832 |
T |
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