View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4348_low_1 (Length: 323)
Name: NF4348_low_1
Description: NF4348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4348_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 148 - 308
Target Start/End: Original strand, 46071942 - 46072102
Alignment:
| Q |
148 |
ctatggaacaccacctcattgagtatcacgattatatttgatgctcttagagtatcacagttatgcaaatagtccggctaaaatcatgagaatttgattg |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46071942 |
ctatggaacaccacctcattgagtatcacgattatatttgatgctcttagacgatcacagttatgcaaatagtccggctaaaatcatgagaatttgattg |
46072041 |
T |
|
| Q |
248 |
agataatgcgtgtccttttcaatttaaccaacgattgtaagctaaaatttgacctatagaa |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46072042 |
agataatgcgtgtccttttcaatttaaccaacgattgtaagctaaaatttgacctatagaa |
46072102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 46069801 - 46069952
Alignment:
| Q |
1 |
cacagaaaccagaaccaagagttttcaacaagtggactgcaccaaaaaatttgaccaccagcagcaatttgagacacttctaaattctgacagcagccat |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46069801 |
cacaaaaaccagaaccaagagttttcaacaagtggactgcaccaaaaaatttgaccaccagcagcaatttgagacacttctaaattctgacagcagccat |
46069900 |
T |
|
| Q |
101 |
acatattcataaatctcgcagcaatagccctacagtcatccagtctcctatg |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46069901 |
acatattcataaatctcgcagcaatagccctacagtcatccagtctcctatg |
46069952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University