View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4349-Insertion-1 (Length: 937)
Name: NF4349-Insertion-1
Description: NF4349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4349-Insertion-1 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 553; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 240 - 937
Target Start/End: Complemental strand, 42656813 - 42656111
Alignment:
| Q |
240 |
gagtggaactaacccagatttttagataaggtcttgtgtttaagctttgtagattgagaccttactaaaaatggtcagttagatcctcgacagatattaa |
339 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
42656813 |
gagtgaaactaactcagatttttagataaggtcttgtgtttaagctttgtagattgagaccttactaaaagtggtcagttagatcctcgacagatattaa |
42656714 |
T |
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| Q |
340 |
tcaaaaacaaagtcggtcgatactttctgaatgtgatctctggaatctgaattagtttactgttaaatttaatttcattgtgcatatgcatgcagttttt |
439 |
Q |
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| T |
42656713 |
tcaacaataaagtcggtcaatactttttgaatgtgatctctgaaatctgaattagtttacttttaaatttaatttcattgtgcatatgcatgcagttttt |
42656614 |
T |
|
| Q |
440 |
accaaacaaattatggtcaggnnnnnnncaatgtctagcagacaaaagtgcaacaaagtgtttttcagacggcttttctagtgattaagaaaaattgaaa |
539 |
Q |
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| T |
42656613 |
accaaacaaattatgttcaggtttttttcaatgtctagcagacaaaagtgcaacaaagtgtttttcaaacagcttttctagtgattaagaaaaattgaaa |
42656514 |
T |
|
| Q |
540 |
taattaactctaatctaatactaagcaaaaagattcagtcacacagttaccttgaaacaagacatgtagccatgtacgtgttgtgttgactttccaccaa |
639 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42656513 |
taattaactctaatctaatactaagcaaaaagattcagtcacacagttaccttgaaacaagacatgtagccatgtacgtgttgtgttgactttccaccaa |
42656414 |
T |
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| Q |
640 |
tactaaactaagaaatggtcattttccatctaaaatataaaaaatatggtgatgccgttggcaatggaaagtttcacctcaaaactcttcttctaacgtg |
739 |
Q |
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| T |
42656413 |
tactaaactaagaaatggtcattttccatctaaaatataaaaaatatggtgatgccgttggcaatggaaagtttcacctcaaaactcttcttctaacgtg |
42656314 |
T |
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| Q |
740 |
ttctttaatcttatctatacataaattaattgaaagag-tagaaatagaaacc-agtttatatattcaannnnnnnagtctgaaaaccaacaatagatat |
837 |
Q |
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| T |
42656313 |
ttctttaaacttatctatacataaattaattgaaagagttagaaatagaaaccaagtttatatattctatttttttagtctgaaaaccaataatagatac |
42656214 |
T |
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| Q |
838 |
aaatctttaactcttgataataatgtgc-aaccatggttaagtccataggatctttatc-atcacttaatctatggttaaggcat-aaagacctgtgatt |
934 |
Q |
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| T |
42656213 |
aaatctttaactctagataataatgtgcaaaccatggttaagtccataggatctttatcaatcacttaatctatggttaaggcataaaagacctgtgatt |
42656114 |
T |
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| Q |
935 |
ttc |
937 |
Q |
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| T |
42656113 |
ttc |
42656111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 1e-90
Query Start/End: Original strand, 7 - 180
Target Start/End: Complemental strand, 42656983 - 42656810
Alignment:
| Q |
7 |
ataatatacattactacttcattggaaataatatagagctctttttggattgtgcgctcaacatgtagcgtgagagacggagaatattctcacaaatctt |
106 |
Q |
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| T |
42656983 |
ataatatacattactacttcattggaaataatatagagctctttttggattgtgcgctcaacatgtagcgtgagagacggagaatattctcacaaatctt |
42656884 |
T |
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| Q |
107 |
ccttcaaattttcaattaaatattataccactcaattatagtagcactggtttttcataccaaaaaataagagt |
180 |
Q |
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| T |
42656883 |
ccttcaaattttcaattatatattataccactcaattatagtagcactggtttttcataccaaaaaataagagt |
42656810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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