View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4349-Insertion-3 (Length: 701)
Name: NF4349-Insertion-3
Description: NF4349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4349-Insertion-3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 381; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 206 - 615
Target Start/End: Complemental strand, 38140441 - 38140032
Alignment:
| Q |
206 |
gggagagcaaagtatagcgtactttctgccaagctgccaatgcaaaacatttcccataagtttttcaagccaaaactctgtttgagatcaaacacagtca |
305 |
Q |
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| T |
38140441 |
gggagagcaaagtatagcgtactttctgccaagctgccaatgcaaaacatttcccataagtttttcaagccaaaactctgtttgagatcaaacacagtca |
38140342 |
T |
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| Q |
306 |
tcttttatgaaagttctaatatctaaaagattgaaggatgaaactggtgtttttattactctgtgacttggaagtacagtagtaacatgcaacggcctta |
405 |
Q |
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| T |
38140341 |
tcttttatgaaagttctaatatctaaaagattgaaggatgaaactggtgtttttattactctgtgacttggaagtacagtagtaacatgcaacggcctta |
38140242 |
T |
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| Q |
406 |
tcttggttagcatcactttattttannnnnnncgaaaactatatcatctcttaaatctaccaaagcttactcagaagtcgcgacataaaattatatcaca |
505 |
Q |
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| T |
38140241 |
tcttggttagcatcactttattttatttttttcaaaaactatatcatctcttaaatctaccaaagcttactcagaagtcgcgacataaaattatatcaca |
38140142 |
T |
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| Q |
506 |
catgagtttgatcacaatcaactgtgaatattttttatccttatgtcttgagtgactcattactcattatttacagcaaagactttgagtataaaccaga |
605 |
Q |
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| T |
38140141 |
catgagtttgatcacaatcaactgtgaatattttttatccttatgtcttcagtgactcattactcattatttacagcaaagactttgagtataaaccaga |
38140042 |
T |
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| Q |
606 |
gccaaacctc |
615 |
Q |
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| T |
38140041 |
gccaaacctc |
38140032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 624 - 701
Target Start/End: Complemental strand, 38139892 - 38139815
Alignment:
| Q |
624 |
ggaaaacctgctactaaaatctcattctcaatagtaacccttaaaaatgcaaatctttagcaaagctcaaatcatcat |
701 |
Q |
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| T |
38139892 |
ggaaaacctgctactaaaatctcattctcaatagtaacccttaaaaatgcaaatctttagcaaagctcaaatcatcat |
38139815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 38164914 - 38164836
Alignment:
| Q |
117 |
ttccaccatagaaagacgttgcatgagctttctgccaagctgctgatgctactcttacttcccaggtgaacaatcccacaag |
198 |
Q |
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| T |
38164914 |
ttccaccatagaaag---ttgcatgagctttctgccaagctgctgattctactcttacttctgaggtgaacaaccccacaag |
38164836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 38163245 - 38163205
Alignment:
| Q |
261 |
ataagtttttcaagccaaaactctgtttgagatcaaacaca |
301 |
Q |
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| T |
38163245 |
ataagtttttcaagccaaaattccgtttgagatcaaacaca |
38163205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 625 - 701
Target Start/End: Complemental strand, 49005430 - 49005352
Alignment:
| Q |
625 |
gaaaacctgctactaaaatctcattctcaatagtaaccctt--aaaaatgcaaatctttagcaaagctcaaatcatcat |
701 |
Q |
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| T |
49005430 |
gaaaacctgctactaaaatctcattctcaatattaaccctttaaaatatgctaggctttagcaaagctcaaatcatcat |
49005352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 503 - 569
Target Start/End: Complemental strand, 49005621 - 49005554
Alignment:
| Q |
503 |
acacatgagtttgatcacaatcaact--gtgaatattttttatccttatgtcttgagtgactcattact |
569 |
Q |
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| T |
49005621 |
acacatgagtttgatcacaatcaattccgtgaatattttt-atccttatgtcttcagtgactcattact |
49005554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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