View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4349-Insertion-4 (Length: 510)
Name: NF4349-Insertion-4
Description: NF4349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4349-Insertion-4 |
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| [»] chr8 (5 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 271 - 510
Target Start/End: Original strand, 18599344 - 18599583
Alignment:
| Q |
271 |
tattttcacacaatgtatcctctacaaatacatgaataacttacacaaaactttatggatttagctaagctcaaaccaatatctcacaagaaattttatc |
370 |
Q |
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| T |
18599344 |
tattttcacacaatgtatcctcgacaaatacgtgaataacttacacaaaacttcatggatttggctaagctcaaactaatatctcacaagaaattttatc |
18599443 |
T |
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| Q |
371 |
tttgttttcttcttcatccattgtatcacaaagtactctcccttttgtctcaggtaagaacactccaaatactccactaaaaccaatagccaacccaaaa |
470 |
Q |
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| T |
18599444 |
tttgttttcttcttcatccattgtatcacaaagtactctcccttttgtctcaggtaagaacactccaaatactccactaaaaccaatagccaacccaaaa |
18599543 |
T |
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| Q |
471 |
accccataacaaagaaacttatttcctctaccagcaccca |
510 |
Q |
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| T |
18599544 |
accccataacaaagaaacttatttcctctaccagcaccca |
18599583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 18598073 - 18598178
Alignment:
| Q |
5 |
acagttcttatggaatctgtaaatagctacccttggaactggaatgcctggactgagctgcaatccttatgcacatcggttgatatcttaaatactctta |
104 |
Q |
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| T |
18598073 |
acagttcttgtggaatctgtaaatagctacccttggaactggaatgcctggactgagctgcaatccttatgcacttccgttgatatcttaaatactctta |
18598172 |
T |
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| Q |
105 |
atctcc |
110 |
Q |
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|||||| |
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| T |
18598173 |
atctcc |
18598178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 150 - 241
Target Start/End: Original strand, 18599256 - 18599345
Alignment:
| Q |
150 |
aaatagagtgcttaattacacatatgagccaaatttttaatgaagttattctaacacacattattgaacttttaattgactgtacctaaata |
241 |
Q |
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| T |
18599256 |
aaatagagtgcttaattacacatatgagccaaatttttaattaagttattcta--acatattattgaacttttaattgactgtacctaaata |
18599345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 5 - 109
Target Start/End: Complemental strand, 7530172 - 7530068
Alignment:
| Q |
5 |
acagttcttatggaatctgtaaatagctacccttggaactggaatgcctggactgagctgcaatccttatgcacatcggttgatatcttaaatactctta |
104 |
Q |
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| T |
7530172 |
acagttcttgtggaatctgtaaatagctacccttggaactggaatgcatggactgagctacaatccttatgcactacagttgatagcttgaatagtctta |
7530073 |
T |
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| Q |
105 |
atctc |
109 |
Q |
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||||| |
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| T |
7530072 |
atctc |
7530068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 139
Target Start/End: Original strand, 18599203 - 18599237
Alignment:
| Q |
105 |
atctccctcttcctttttgatggctcgtcgtttta |
139 |
Q |
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| T |
18599203 |
atctccctcttcctttttgatggctcgtcgtttta |
18599237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 46962371 - 46962270
Alignment:
| Q |
5 |
acagttcttatggaatctgtaaatagctacccttggaactggaatgcctggactgagctgcaatccttatgcacatcggttgatatcttaaatactctta |
104 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| || |||||||| ||||||| ||||| |
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| T |
46962371 |
acagttcttgtggaatctgtaaatagctacccttggaactggaatgcctggactgagctacaatccttatccacttcagttgatattttaaatagtctta |
46962272 |
T |
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| Q |
105 |
at |
106 |
Q |
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|| |
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| T |
46962271 |
at |
46962270 |
T |
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