View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4349-Insertion-5 (Length: 470)
Name: NF4349-Insertion-5
Description: NF4349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4349-Insertion-5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 321
Target Start/End: Complemental strand, 44829382 - 44829073
Alignment:
| Q |
8 |
gaattgactataagagagacatcatatatatatttaccataaactttaaaatactagtagactttggtcacatttattatttatccaacattgaaatcat |
107 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44829382 |
gaattgactataagagagacatcatatat----ttactataaactttaaaatactagtagactttggtcacatttattatttatcaaacattgaaatcat |
44829287 |
T |
|
| Q |
108 |
caataaccgatgtatatactaaccactcatataaatagcaaactcctctgtaccatttatccatcacacatcaaagtaacacaactacacctccccctaa |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44829286 |
caataaccgatgtatatactaaccactcatataaatagcaaactcctgtgtaccatttatccatcacacatcaaagtaacacaactacacctccccctaa |
44829187 |
T |
|
| Q |
208 |
aaatatagagaaaaagatataatttatccttttaggtcttgctttgtcaagctattttgttactctcatatagaatatggtattataattatctatctaa |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44829186 |
aaatatagagaaaaagatataatttatccttttaggtcttgatttgtcaagctattttgttactctcatatagaatatggtgaaataattatctatctaa |
44829087 |
T |
|
| Q |
308 |
tatcatattagatt |
321 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
44829086 |
tatcatattagatt |
44829073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 319 - 470
Target Start/End: Complemental strand, 44829048 - 44828896
Alignment:
| Q |
319 |
attagatttttatattaaatctaactgattcttataacaccaacttgtaaaatgaagtgcatcccaccttataaactcactttaaatttatgtgagattt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
44829048 |
attagatttttatattaaatctaactgattcttataataccaacttgtaaaatgaagtgcatcgcaccttataaactcactttaaatttatgtgagattt |
44828949 |
T |
|
| Q |
419 |
ga-nnnnnnncatccaatattgaaatactcgacagtattaaaaagtagatgag |
470 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44828948 |
gattttttttcatccaatattgaaatactcgacagtattaaaaagtaaatgag |
44828896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University