View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4349-Insertion-7 (Length: 283)
Name: NF4349-Insertion-7
Description: NF4349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4349-Insertion-7 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 277
Target Start/End: Complemental strand, 6046620 - 6046351
Alignment:
| Q |
8 |
gatgtatcccaatgaactgaaaggccttgttcataatgatcaacacggtagttatactgagtcactactgaaaagatatccaagaattggaatttggggc |
107 |
Q |
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| T |
6046620 |
gatgtatcctaatgaactgaaaggccttgttcataacgatcaacacggtagttatactgagtcactgctgaaaagatattcaagaattggaatttggggc |
6046521 |
T |
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| Q |
108 |
atgggtggaatagggaagacaactatagcccgacagatgtttgccaagcactttgcacaatacgacagtgcttgctttatggaaaatgtaagtgaagaag |
207 |
Q |
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| T |
6046520 |
atgggtggaatagggaagacaaccatagccagacagatgtttgcaaagcactttgcacaatatgaaagcgcttgctttatggaaaatgtaagtgaagaaa |
6046421 |
T |
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| Q |
208 |
tacaaaagtctggactaaggaatatccgtattaagctttttagtgagctactaaagcgacaaattactgc |
277 |
Q |
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| T |
6046420 |
tagaaaagtttggaccaaggtacatccgtaataagcttcttagtgagctgcttaagcgacaaattactgc |
6046351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 61 - 209
Target Start/End: Complemental strand, 6062810 - 6062662
Alignment:
| Q |
61 |
atactgagtcactactgaaaagatatccaagaattggaatttggggcatgggtggaatagggaagacaactatagcccgacagatgtttgccaagcactt |
160 |
Q |
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| T |
6062810 |
atactgaatcactactgaaaaagtatcaaagaattggaatttggggcatgggaggaataggaaagacaaccatagccagacagatgtttgccaagcactt |
6062711 |
T |
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| Q |
161 |
tgcacaatacgacagtgcttgctttatggaaaatgtaagtgaagaagta |
209 |
Q |
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| T |
6062710 |
tgcacaatatgaaagtgcttgctttctggaaaatgcatgtgaagaagta |
6062662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 60 - 205
Target Start/End: Complemental strand, 6087989 - 6087844
Alignment:
| Q |
60 |
tatactgagtcactactgaaaagatatccaagaattggaatttggggcatgggtggaatagggaagacaactatagcccgacagatgtttgccaagcact |
159 |
Q |
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| T |
6087989 |
tatactgaatcactactgaaaaagtatcaaagaattggaatatggggcatgggaggaatcggaaagacaaccatagccagacaaatgtttgccaagcact |
6087890 |
T |
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| Q |
160 |
ttgcacaatacgacagtgcttgctttatggaaaatgtaagtgaaga |
205 |
Q |
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| T |
6087889 |
ttgcagaatatgacagcgcttgctttttggaaaatgtaagtgaaga |
6087844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 87 - 283
Target Start/End: Complemental strand, 6179131 - 6178935
Alignment:
| Q |
87 |
ccaagaattggaatttggggcatgggtggaatagggaagacaactatagcccgacagatgtttgccaagcactttgcacaatacgacagtgcttgcttta |
186 |
Q |
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| T |
6179131 |
ccaagaattggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaactttgcccattatgacaatgtatgcttct |
6179032 |
T |
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| Q |
187 |
tggaaaatgtaagtgaagaagtacaaaagtctggactaaggaatatccgtattaagctttttagtgagctactaaagcgacaaattactgcgtctga |
283 |
Q |
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| T |
6179031 |
tggaaaaggtaagcgaagactcagaaaagttgggaccaatatatgttcgtaatcagcttcttcgtgagctactgaagcgagaaattacagcgtctga |
6178935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 6187921 - 6187845
Alignment:
| Q |
87 |
ccaagaattggaatttggggcatgggtggaatagggaagacaactatagcccgacagatgtttgccaagcactttgc |
163 |
Q |
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| T |
6187921 |
ccaagaattggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgttttccaagaactttgc |
6187845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 6141074 - 6141000
Alignment:
| Q |
87 |
ccaagaattggaatttggggcatgggtggaatagggaagacaactatagcccgacagatgtttgccaagcacttt |
161 |
Q |
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| T |
6141074 |
ccaagagttggaatttggggcatgagtggaataggaaagacaaccatagcaaaacagatgtttgccaagaacttt |
6141000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 6123759 - 6123833
Alignment:
| Q |
86 |
tccaagaattggaatttggggcatgggtggaatagggaagacaactatagcccgacagatgtttgccaagcactt |
160 |
Q |
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| T |
6123759 |
tccaagaattggaatttggggtatggatggattaggaaaaacaaccatagcaagacaaatgttttcgaagcactt |
6123833 |
T |
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