View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4349_high_1 (Length: 477)
Name: NF4349_high_1
Description: NF4349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4349_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 48080613 - 48080188
Alignment:
| Q |
1 |
ctattttcaatcataattttgagtttgtatgattcatgaaatgtatttttaaagacaaatatcatgatgtcaatgaatcaaagcaatgcttataaaacaa |
100 |
Q |
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| T |
48080613 |
ctattttcaatcataattttgagtttgtatgattcatgaaatgtatttttaaagacaaatatcatgatgtcaatgaatcaaagcaatgcttataaaacaa |
48080514 |
T |
|
| Q |
101 |
tttgctaaaccaaagtgtgatgtcaaacattccaatcaatagttgattattcacaatcacaatcctcacaaatgttgcacccaacgtgtaccttgtattc |
200 |
Q |
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| T |
48080513 |
tttgctaaaccaaagtgtgatgtcaaacattccaaccaatagttgattattcacaatcacaatcctcacaaatgttgcactcaacgtgtaccttgtattc |
48080414 |
T |
|
| Q |
201 |
acaacaaatcaattttaaaaataaactaagcaattatcacaaaacatgcaatcaatcatggatcactaatatatttccttgggttgtaatatgttagtct |
300 |
Q |
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| T |
48080413 |
acaacaaatcaattttaaaaataaactaagcaattatcacaaaacatgcaatcaatcatggatcactaatatatttccttgggttgtaatatgttagtct |
48080314 |
T |
|
| Q |
301 |
tcacaaaatcctttgcttctcctctaagaacgcaaaaagcctgaaaggttaaaagaacattttttcaatatacactacatatcctgaccacactttcttt |
400 |
Q |
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||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48080313 |
tcacaaaatcctttgttt---ttctaagaacgcaaaaagcctaaaaggttaaaagaacattttttcaatatacactacatatcctgaccacactttcttt |
48080217 |
T |
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| Q |
401 |
ccttttccacactcaacaccatttggtaa |
429 |
Q |
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| T |
48080216 |
ccttttccactctcaacaccatttggtaa |
48080188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 27906435 - 27906365
Alignment:
| Q |
102 |
ttgctaaaccaaagtgtgatgtcaaacattccaatcaatagttgattattcacaatcacaatcctcacaaa |
172 |
Q |
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|||||||| ||||||||||||||||||||| ||||||| ||| |||||||| ||||||||| |||||||| |
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| T |
27906435 |
ttgctaaatcaaagtgtgatgtcaaacatttcaatcaaaagtcaattattcataatcacaatgctcacaaa |
27906365 |
T |
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