View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4349_high_2 (Length: 411)
Name: NF4349_high_2
Description: NF4349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4349_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 4106068 - 4105835
Alignment:
| Q |
1 |
caaaaatcatttctcttatttttatttcttacttttatttcatcgttaaatacttgtgcaagaggcatttcacacccactcaaggatggagcttaggttt |
100 |
Q |
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| T |
4106068 |
caaatatcatttctcttatttttatttcttacttttatttcattgttatatacttgtgcaagagacatttcacacccactcaaggatggagcttaggttt |
4105969 |
T |
|
| Q |
101 |
aggcttagctctacctgtagtgcgcttgtgcccacaacacaatggctagcttgactattaggatcaatatcaatttatattttatatgattgtgttattg |
200 |
Q |
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| T |
4105968 |
aggcttagctctacctgtactgcacttgtgcccacaacacaatggctagcttgactattaggatcaatatcaatttataatttatatgattgtgttattg |
4105869 |
T |
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| Q |
201 |
gtctcaaaataaataataaattcaactcattatt |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
4105868 |
gtctcaaaataaataataaattcaactcattatt |
4105835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 219 - 401
Target Start/End: Complemental strand, 4105726 - 4105544
Alignment:
| Q |
219 |
aattcaactcattattatttaccatattcatgaagaatgcagtcggcgtaatattgtgttattggtctcaaaataaataataaattcttgcatatatttg |
318 |
Q |
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|||||||| ||||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4105726 |
aattcaacccattagtatttaccatattcatgaagaatacagccggcgtaatattgtgttattggtctcaaaataaataataaattctcgcatatatttg |
4105627 |
T |
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| Q |
319 |
ctcataacataacttaattgacaggaataatatattattatatgtaatcggcgttcaaacctcgcacacccacttattcatct |
401 |
Q |
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| T |
4105626 |
tgcataacataacttagttgacaggaacaatatattgttatatgcggtcggcgtttgaacctcgcacacccacttattcatct |
4105544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 223
Target Start/End: Complemental strand, 4105674 - 4105640
Alignment:
| Q |
189 |
attgtgttattggtctcaaaataaataataaattc |
223 |
Q |
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| T |
4105674 |
attgtgttattggtctcaaaataaataataaattc |
4105640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 4105880 - 4105846
Alignment:
| Q |
271 |
attgtgttattggtctcaaaataaataataaattc |
305 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
4105880 |
attgtgttattggtctcaaaataaataataaattc |
4105846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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